Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31880g00001 ATGTTGCATCAATCCAAAGGAAATGGAGAAGAATTTATTAACGAGGTAGCTAGCATTTGTAGAACTTCTCATGTTAATGTTGTCACCCTTCTTGGCTTTTGCTTAGAAGGTCACAAAAAAGTTCTCATCTATGAGTTTATGCCTAATGGTTCCCTCGACAATTTTATTTTCAAAAAGGAACCTAAGAATACTCCACTCTTGTGTTGGGAAAAATTGTATCAAATTTCCATAGGCATAGCAAGAGGATTGGAGTATTTGCATAGAGGATGCAACATTCGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAGCTTTTGTCCTAAGATATCAGATTTCGGGCTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCATATTTCCATGTCCGAAACAAGAGGTACAATAGGGTACATAGCTCCAGAAGTGTTCAATAGACATTTTGGTAGAGTTTCACATAAATCCGATGTTTATAGCTTTGGAATGATGCTTATAGAAATGGTAGGGATGAAAGAGAACAACAAAATTGCAGAGACAAGTCAAGCAAGTGAAAAGTACTTCCCCGATTGGATATACAAAAGGCTTGAACAAGGAACTCAAGAAGGACCTGGTGATGAAGAGTTATCAATGGAGGAAAATGATGTTGTGAAGAAGATGACAGTGGTGGGTTTATGGTGCATTCAACCAATTCCAGATGATAGACCAACAATGAGCAAAGTTGTGGAAATGTTGGAAGGTACCATGAATTCCCTGGAAGTGCCTCCAAGACCTGTTCTGTCTTCTCCGATAAGATTAGTCATAGAATCTTCTACGGTGTCTTCGATGGTAGAATCTTCTTCTATTGTTATTTAA 861 0.3717 MLHQSKGNGEEFINEVASICRTSHVNVVTLLGFCLEGHKKVLIYEFMPNGSLDNFIFKKEPKNTPLLCWEKLYQISIGIARGLEYLHRGCNIRILHFDIKPHNILLDESFCPKISDFGLAKLCPRKESHISMSETRGTIGYIAPEVFNRHFGRVSHKSDVYSFGMMLIEMVGMKENNKIAETSQASEKYFPDWIYKRLEQGTQEGPGDEELSMEENDVVKKMTVVGLWCIQPIPDDRPTMSKVVEMLEGTMNSLEVPPRPVLSSPIRLVIESSTVSSMVESSSIVI 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31880g00001 286 Gene3D Phosphorylase Kinase; domain 1 1 47 - -
Stsc31880g00001 286 SMART serkin_6 3 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31880g00001 286 PIRSF ILK 2 256 - -
Stsc31880g00001 286 Pfam Protein tyrosine and serine/threonine kinase 6 247 IPR001245 GO:0004672|GO:0006468
Stsc31880g00001 286 Gene3D Transferase(Phosphotransferase) domain 1 48 256 - -
Stsc31880g00001 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Stsc31880g00001 286 FunFam PR5-like receptor kinase 47 259 - -
Stsc31880g00001 286 ProSiteProfiles Protein kinase domain profile. 1 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31880g00001 286 SUPERFAMILY Protein kinase-like (PK-like) 8 248 IPR011009 -
Stsc31880g00001 286 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 269 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31880g00001 Stsc-Chr31880 1351 2300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31880g00001 1 276 Receptor kinase-like Gene Family AT1G66910 58.273 5.85e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc31880g00001 PK_Tyr_Ser-Thr 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31880g00001 - - ahf:112751085 486.108