Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31878g00001 ATGGATACACTGAGGATACTGTCTGCTACAGGGGAGGCTTGTGATGATACAAGTCCAAGCAACAACAAACAACAACCATTCTTATTGCAGAGTTCATCATCACAACAAGTAGATACTACTCTGTTGGATCTGAATCTGAATGTCCCTGATGATGATGATGATGATTGCAGCACAGAGCTGAGCCTCATCACCACATGTTTGGACATGGATAATTCCTCAAAAGCTTCACTAGAAGATAACAACAACAACAAAGGTGGTTCTGATGATCAAAGAGTGTTTTCTTGCAACTACTGCCAGAGGAAATTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCTCATAAAAGAGAAAGGTCAATTGCAAAGAGAACTCATCATCATCATCAGAAGCTATTTGGGATCCCTTTTCTTCATCATCACCACAGATATGCTAGTATTGCATCTTTACCTCTCTATGCTAATAAGCCACTAGGAATTCAAGCTCACTCCATGATTCACAAACCTTTTCTTCATCATAATAGCCATAATAATATTATTTGGTCATCAAGACCACCTCCTCTCATTGGAAGTAGTAGTGTTGGTAGATTCCAAGTGGCCAAGAACATGCTCAATTCTGCATCAGATAATGAAGAATTCACCACATATCTCCTTGCTGCAGGGACTCCTTTGAAGACTAATCAACAAGAGAATGTAATGATGAAGAATAATAAGCACCTTGATCTATCTCTTAAGCTCTAG 741 0.3954 MDTLRILSATGEACDDTSPSNNKQQPFLLQSSSSQQVDTTLLDLNLNVPDDDDDDCSTELSLITTCLDMDNSSKASLEDNNNNKGGSDDQRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRTHHHHQKLFGIPFLHHHHRYASIASLPLYANKPLGIQAHSMIHKPFLHHNSHNNIIWSSRPPPLIGSSSVGRFQVAKNMLNSASDNEEFTTYLLAAGTPLKTNQQENVMMKNNKHLDLSLKL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31878g00001 246 Gene3D Classic Zinc Finger 70 134 - -
Stsc31878g00001 246 MobiDBLite consensus disorder prediction 10 34 - -
Stsc31878g00001 246 MobiDBLite consensus disorder prediction 13 34 - -
Stsc31878g00001 246 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Stsc31878g00001 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Stsc31878g00001 246 SUPERFAMILY beta-beta-alpha zinc fingers 90 121 IPR036236 -
Stsc31878g00001 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 28 246 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31878g00001 Stsc-Chr31878 6636 7376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31878g00001 37 246 C2H2 Transcription Factor Family AT5G10970 35.417 6.48e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31878g00001 - - aip:107621568 278.87