Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31846g00001 ATGTCATCATCACACACAGTTGCCACCGAGGCACCGGAGCCCCAGGCGCCGCTCCTCCGCTCCCGCCACGGCAACTCTGATGCCTCTGCCGCGGCTCGGACGCCAACCCTCGCGCTTCTCCTGGGCCGAGCCACGGGCCGCCGCGGCCCATCCATGCTGGTCCGCGAGACGGCAGCACGGGAGCTGGAAGAGCGCCGCGCCGACTGGGGATACTCGAAGCCGGTCGTGGCGCTCGACATGTCGTGGAACATGGCCTTCGTGGTGGTCTCGGCGGTGATGCTTGCGCTCACGTTGGATGAGAGGCCGAACACGCCGATCCGAGTGTGGATCGTTGGGTACGGGCTTCAGTGCCTGCTTCACGTGGTGCTGGTGTGGCTCGAGTACAGGCGCCGGAACCAAAGGAATTCGCGGCGTCAGCGGAGGACGAGTGGCATGGAGAGCGAGGATGCTGATAGCTTTGATGATGCCAATGATAGTGACGATGACGACGTTGCTGATGGAAACTCTTCTCGCTCTGGATTCACAAAACGATGTGAGTCGTTTAATACGGGGATTTCATTCCTTTGGTGGATTGTGGGATTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGCTTATACTGGTTGGCTGTTGTGTTTTTGGCATTTGACGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCTTGCATCATTGCTATCCTCTATGCTGTTGCAGGACAGGAAGGTGCATCAGAAGCAGATCTCAGTATAATTCCAAAATACAGATTTGAAATTTTAAGCAATGAGGAAAAGCCTAATGGGGGAGCTGGAAGAATGGTTCCCATTGAAACCAGCAGTGGATATGTGGCAAACGAACGAACACTTTTACCTGAGGATGCGGAATGTTGCATATGCCTTTGTCCTTACGAGGATGGAACAGAGCTCCATGCTCTTCCGTGCAATCATCATTTCCATTCATCATGCATAGTGAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAAGGAAATGAACAAGTGTGA 1092 0.5247 MSSSHTVATEAPEPQAPLLRSRHGNSDASAAARTPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLALTLDERPNTPIRVWIVGYGLQCLLHVVLVWLEYRRRNQRNSRRQRRTSGMESEDADSFDDANDSDDDDVADGNSSRSGFTKRCESFNTGISFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSIIPKYRFEILSNEEKPNGGAGRMVPIETSSGYVANERTLLPEDAECCICLCPYEDGTELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31846g00001 363 FunFam E3 ubiquitin protein ligase RIE1 292 360 - -
Stsc31846g00001 363 PANTHER TARGET OF ERK KINASE MPK-1 44 361 - -
Stsc31846g00001 363 MobiDBLite consensus disorder prediction 1 31 - -
Stsc31846g00001 363 SUPERFAMILY RING/U-box 299 357 - -
Stsc31846g00001 363 SMART ring_2 312 352 IPR001841 -
Stsc31846g00001 363 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Stsc31846g00001 363 CDD RING-H2_PA-TM-RING 311 353 - -
Stsc31846g00001 363 MobiDBLite consensus disorder prediction 149 163 - -
Stsc31846g00001 363 MobiDBLite consensus disorder prediction 137 173 - -
Stsc31846g00001 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 361 IPR013083 -
Stsc31846g00001 363 Pfam Ring finger domain 311 353 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31846g00001 Stsc-Chr31846 1049 9139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31846g00001 13 362 C3H Transcription Factor Family AT1G68070 67.714 3.83e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31846g00001 - K13148 aip:107643865 606.29