Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31843g00001 ATGCCAAAACTCGTCTACCAAGAGATCATGCAAAGATCTGAAATTTTCAGTTCGACTGTTATTCGTGGTGTCTGCAGAGAATCTTTTCAGAAACATTTCAATATTTTTACACCAGAAAATATTTATCGCTCTATCATCTCAGAAGATGTGGTTGCTAATAGCGGAAACTTTGGTTTTACTCGTTTGGTGGATTTGTCTCCACAAGAGGTGACATTTCTCACCAGTAGTTCTTTCTTGGAGAGACTATTGTTTTCTATGATGAGATGGGAACGCAAATTCCTTGACGAGTTTATAGACTTTCTTACGGAATCCACAATTGCTGCTCACTGCTCAGATCGTAACTTCTCCTATAAAATGATTGAAGAATTGCATGATCCTTGGGCTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGAATCTCTCGGGCCTAGAATGCCTGTTCATTCTCCTCATGATTTAATTCAAGAGATTGATTCTGAACTACCTGTTTCACACCCTGCACTTAAGTTCACGCATGATATTTTTGGCTGTTCACCACCGATGCATAATTTTGATCCAGCGAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATACTATTGAAACGCTTGCGAGCAGGAAATCATCGTGTTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGATTATATGAACTATAGAAAATATAAGTATTTTCGACTCGACGGATCATCTACTATTCAGGATCGCAGAGACATGGTCAAAGATTTCCAGCATAGGAGTGACGTTTTTGTGTTCTTACTGAGTACAAGGGCTGGTGGATTAGGTATCAATTTGACAGCTGCTGATACAGTGATATTTTATGAAAGTGACTGGAATCCAACATTGGATCTGCAGGCAATGGATAGAGCTCATCGTTTGGGGCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAGGAGACAGTTGAAGAAAAGATACTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGCGATCTTTTAGCTCCGGAGGATGTCGTATCTTTGCTTTTGGATGATGTCCAACTTGAACAGAAATTAAAGGAAATCCCTATTAAGGTAAAGGATAAGGAAAAGAGAAAGCAACCAACTAAGGGTATACGTGTAAATGAAGATGGTGATGCATCTCTGGAGGATCTAACAAACTCTGCAGCCCAGGGTACTACAGATTTTGATCTCCCGATGGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCTTCCAGACCAAGGAATTCTCAAAAGACGAGTGAATCTGGCAGTATGGCTATAGATTATGAATTGGATGATAACCTCCTAAGTACTGAACCAGTGGGCCACAAACCAAAGAGACCCAAACGGACGAAGAATGTAAATGAAGATTCTTTTACTGCATCGGCTTCCATATTCCCAGAGTAG 1482 0.4028 MPKLVYQEIMQRSEIFSSTVIRGVCRESFQKHFNIFTPENIYRSIISEDVVANSGNFGFTRLVDLSPQEVTFLTSSSFLERLLFSMMRWERKFLDEFIDFLTESTIAAHCSDRNFSYKMIEELHDPWAKRLFVGFARTSESLGPRMPVHSPHDLIQEIDSELPVSHPALKFTHDIFGCSPPMHNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQHRSDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPIKVKDKEKRKQPTKGIRVNEDGDASLEDLTNSAAQGTTDFDLPMDPEGSKSSNKKRKAASRPRNSQKTSESGSMAIDYELDDNLLSTEPVGHKPKRPKRTKNVNEDSFTASASIFPE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31843g00001 493 FunFam DNA helicase INO80-like protein 167 418 - -
Stsc31843g00001 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 374 IPR027417 -
Stsc31843g00001 493 Pfam Helicase conserved C-terminal domain 199 308 IPR001650 -
Stsc31843g00001 493 MobiDBLite consensus disorder prediction 462 479 - -
Stsc31843g00001 493 MobiDBLite consensus disorder prediction 382 400 - -
Stsc31843g00001 493 SMART helicmild6 225 308 IPR001650 -
Stsc31843g00001 493 Gene3D - 163 414 IPR027417 -
Stsc31843g00001 493 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 199 383 IPR001650 -
Stsc31843g00001 493 CDD SF2_C_SNF 187 319 - -
Stsc31843g00001 493 PANTHER HELICASE SRCAP-RELATED 104 404 - -
Stsc31843g00001 493 MobiDBLite consensus disorder prediction 382 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31843g00001 Stsc-Chr31843 832 6636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31843g00001 159 335 RAD5 or RAD16-like Gene Family AT1G61140 33.333 1.62e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31843g00001 K11665 - gmx:100780615 627.861