Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31831g00002 ATGATGATACCAAGTTCTCGTTATTCCCATCATCATCCTTTGCCTTTTGATCTCAATCTCAATGAAGAAGAACATCACTTCTTCACTACTACTACTACAAACTCTTCTCAACTCTCTTCTTCTTTATCATCATCATCATCATACCCATACCCGGATCAACCACTAGGATCTTACTCTTTTTGGGAACAACAACCGAACCATTTTCAACTAACTCATCAACAACAGGCCGAGAAGATTCATAATCCTTCTAGTGGAGGATCATGGGATCAAAGAGAAGAAGAAGAAAAGGGTGGAAAGAGAAAGAGTAGTAAACTCATCAAGTTGAAAATTTTGAAGAAAGAAGATAGGAAAAATGAAAATCATGTTCATAGTGAAGCTCATGATGATGATGAGGATCAAGGTTCAGTGAAGTGGATGTCTTCAAAGATGAGGATCATGGGTGGTTCTGATGAAACTAATAACAATAATTTCAGGTTAGGGTTTGATGATGAAGAGCCACCAAAGCAGCAACCGCCACTATCCCTTTTAGTAACTGATAGCAGCAGCAACAACAATAATTCTTCTTCAACCCATGATGATAATAATAATAATAATATTATTATTATGAGTGTTAGGGTTTGTTCTGATTGTCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGCCCCAAGTCTCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCGAGGCGAGCTGCCATGGCAGCCGCAGCGGAGGCGGCAGCATCAACGAAGGATACAACTCTCATGGCTAATACTGATGATAATGGATCTGATCATCATGGTATGAAGAACGAAAAGAAGTTACACAAGCACAACAAAAACAAAGATAGCAAGTTGAAAGGCAAGTGTATTATTAGTGCACCAAATCAGTTGAAAAAGAAGCGCAATAATAACAATAAACAATCTCATCACCATAATAAAGGAAGAAAGAAGGTTAGATTTGATGAGTTGACAATAAATTTGAGCAAGAACTTGGCATTGAAAGAAGTGTTCCCTCATGATGAGAAAGAGGCTGCAATCTTGCTCATGGCTTTATCCTATGGTTTGCTTCATGGATTTCCCTCACATCGTTACTTAGACTAA 1116 0.388 MMIPSSRYSHHHPLPFDLNLNEEEHHFFTTTTTNSSQLSSSLSSSSSYPYPDQPLGSYSFWEQQPNHFQLTHQQQAEKIHNPSSGGSWDQREEEEKGGKRKSSKLIKLKILKKEDRKNENHVHSEAHDDDEDQGSVKWMSSKMRIMGGSDETNNNNFRLGFDDEEPPKQQPPLSLLVTDSSSNNNNSSSTHDDNNNNNIIIMSVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMAAAAEAAASTKDTTLMANTDDNGSDHHGMKNEKKLHKHNKNKDSKLKGKCIISAPNQLKKKRNNNNKQSHHHNKGRKKVRFDELTINLSKNLALKEVFPHDEKEAAILLMALSYGLLHGFPSHRYLD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 307 321 - -
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 71 86 - -
Stsc31831g00002 371 Gene3D - 202 264 IPR013088 GO:0006355|GO:0008270
Stsc31831g00002 371 ProSiteProfiles GATA-type zinc finger domain profile. 205 237 IPR000679 GO:0006355|GO:0043565
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 71 197 - -
Stsc31831g00002 371 ProSitePatterns GATA-type zinc finger domain. 207 232 IPR000679 GO:0006355|GO:0043565
Stsc31831g00002 371 SMART GATA_3 201 253 IPR000679 GO:0006355|GO:0043565
Stsc31831g00002 371 CDD ZnF_GATA 206 234 IPR000679 GO:0006355|GO:0043565
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 259 321 - -
Stsc31831g00002 371 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 241 - -
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 108 137 - -
Stsc31831g00002 371 FunFam GATA transcription factor 21 202 288 - -
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 173 197 - -
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 87 101 - -
Stsc31831g00002 371 MobiDBLite consensus disorder prediction 29 49 - -
Stsc31831g00002 371 Pfam GATA zinc finger 207 240 IPR000679 GO:0006355|GO:0043565
Stsc31831g00002 371 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 8 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31831g00002 Stsc-Chr31831 9298 11213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31831g00002 106 238 C2C2-Gata Transcription Factor Family AT5G56860 42.208 2.67e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc31831g00002 GATA 4.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31831g00002 - - adu:107478822 367.081