Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc317g00001 ATGGATGATTTTTGGAGCCTGATTTGTATGGACTCTGATTGTTCCAAGGGTAGAGAAAATCCTTTCTGTGATTATTTCAAGTTCTTGCAAGATCAATCCAAATGCATCAACCATTTCTTGATCATTTGCTTTGATATCTTGCTGCTGATCATGCTGGCATTCACTATGATCAAGAGGACTTCATCAACTCCATTCCATGGCCGAACACGAGCCGAAAGATATTCGAATTTGCAGCTAGTTTCTGCCATAACCAATGGAGTTCTAGGCTTGGTGCATTTATGCTTAGGAATTTGGATTTTGGAGGAGATGATAAGAAAAAACCACACTGCATTGCCTCTTAATTGGTGGTTGGTAGAATTCTTTCAAGGAATCACATGGCTTGTAGCAGCATTCTTAGTAGTAAGTCTTCGGCTTAGACAATATCCGGTAACATCGTTGCGAATTTCTTCTGTTCTTCTACTTATTGCTTCTAGCATACTATGTTCTTTGTCCTTGTTCAATGCAATTAGCAGCAGAGGACTCTCCCTGAAGATAGCTTTAGATGTTCTATCTTTTCCAGCATCAATCTTAGTACTTCTATGCACATTCAAAGTATGTGAGCATGAAGAAAAGTTCAAAGAAAAGGATGAAAGCCTTTATGCTCCTTTGAATGGACAGTTGAATGAAACTGATTCTGTTAGTGATCTAGTCACGCCATTCGCGAATGCTGGATTCTTTAGCTGGATGACATTCTGGTGGTTGAATCCATTGATGAAGAAGGGTAAAGAGAAAGCACTTGAGGATGAGGATATCCCAAAGCTGCGCGAGCCGGATCGAGCTGAGAGTTGTTATTTGTTGTTTATGGAACAACTGAACAAACAGAAACAAAAGGAACCATCATTGCAGCCATCAGTATTTTGGACTATAATGTCCTGCCACTGGAGAGAGATTTGGATTTCAGGATTCTTTGCATTTCTTAAGGTAGTTACTCTGTCTTGTGGTCCCTTGCTTCTGAATGCATTCATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTTTGTGTTAGCCATATCACTTTTCTTCGCAAAGATCATAGAATCTTTGTCACAAAGGCAATGGTATTTTCGATCTAAACTCGTTGGCATGAAGGTTAGATCACTTCTCACTGCAGCCATTTATAAGAAACAATTGAAGCTATCAAATGCTGCTAGATTGGAGCATTCTGGTGGTGAGATCATGAATTATGTGACAGTTGATGCTTATAGGATTGGAGAATTTCCATTTTGGTTTCACCAGATGTGGACAACAAGCCTCCAAATATGCATTGCTTTGGTGATTCTTGTCCGGGCTATTGGACTCGCAACGATTGCCTCGATGGTAGTAATAATTCTCACAGTACTTTGCAATGCTCCATTGGCAAAGATACAGCAGAAGTTTCAAAGCAAGCTCATGGTGGCACAAGATGAGAGATTGAAGGCTAATTCTGAGGCTCTTGTGAATATGAAAGTGCTGAAGCTATATGCATGGGAGAAGCATTTTAAGAAGGCTATTGAAGGCTTAAGGAATGTTGAACTTGAAATGTTATCAGCAGTGCAATCAAGAAAGGCCTACAACATCTTTCTCTTTTGGTCTTCGCCTATTCTGGTGTCGGCGGCTTCCTTCGCCGCTTGCTACTTCTTGGAGATTCCTTTGCATGCAAACAATGTTTTCACTTTTGTGGCAACCTTGAGGCTTGTGCAAGAGCCAATTACAGCTATACCAGATGTTATTGGAGTGGTTATTCAGGCGAAAGTTGCATTCGCCCGAATTGTGAAGTTTCTTGAGGCATCTGAACTGCAGAATTCAAATTGCAGGAAGAGTTGTGTTGATGATAGCCTCAGAGGCTCAATTTCAATCAAATCTGCTGATTTTTCATGGGAAGATAATGTGTCAAAGCCAACACTTAGAAACATAAATTTGGAGGTTAGACATGGACAGAAGGTAGCAATTTGTGGAGAAGTTGGATCAGGAAAATCAACTCTCTTAGCAACAATTCTTGGAGAAGTTCCAAATACAAAGGGAACTATTGAAGTTTATGGCAGTTTTGCATATGTTTCTCAAACAGCATGGATACAGTCAGGTACAATAAGGGAAAACATTTTGTTTGGATCAGAATTGGATCCACAAAGATACAAAGAGACACTGTATAGATCTTCACTGCTAAAGGATCTTGAGTTATTTCCCTATGGGGATCTAACCGAAATAGGCGAGAGGGGAGTTAACCTTAGTGGAGGTCAGAAGCAGCGAATTCAGCTAGCTCGTGCGCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCTCACACAGCCACAAATTTGTTTAAGGAATATATCATGGAAGGACTTGCAGGGAAGACTGTGTTACTTGTGACTCATCAAGTTGATTTCCTCCCAGCTTTTGATTCTGTTATGTTGATGTTAGATGGTGAAATTCTACAAGCTGCTCCTTATCACCATCTATTGGAATCAAGCCAAGAATTCCAAGAACTCGTCGAGGCTCACAAGAAGACTGCTGGTTCTGACCATCAAGTTGACACTCCTTCTGCCAAGAGAGATTCAAATTCAGGCAGAGAGATTAAGCAAGATTTCTTGGAGAAGAAGTTACACGCTTCGAACGATAATAAGTTGATTAAGCAAGAAGAAAGGGAGATAGGAGACACTGGATTAAAGCCTTACATTCAGTATATGAATCAGATGAAAGGATACATATACTTCGCCGCTGCTACGCTTTGTCACCTTTTATTTGTGCTGGGCCAGATACTGCAAAATTCATGGATGGCTGCTAATGTTGACAACCCTCATATCCAAACTCTGAAATTGATCTTAGTCTACTTGCTTCTCGGAGTTGTTGCGCTCGTTTTCATGTTAATCAGAACCTTTGTTATAGTTGCTTTAGGTCTTCAATCATCAAAATATCTATTTTCACAGCTGATGAACTCCCTTTTCCGCGCACCGATGTCTTTTTATGACTCCACACCTTTGGGAAGGATACTAAGCAGGGTATCTGCAGATTTAAGCATTGTGGATCTTGATATACCATTTTACCTTGCTTATACTGTGGGGGGTACTATAAATTTTTATTCTAATCTTGCAGTCTTAGCATTTGTGAGTTGGCAAGTCTTGTTTGTTGCCATACCACTGGTTTTAGTTGCGATTCGGTTGCAGAATTACTACTTTGCTACTGCAAAAGCATTGATGAGGATGAATGGCACAACAAAATCATTTGTAGCTAATCATTTAGCTGAAACTAATGCTGGAGCTGTGACCATAAGGGCCTTTAAGGAGGAAGATCGATTTTTCAAGAAGAATCTTGATCTGATTGATGTCAATGCTAGTCCATTCTTCCATAGTTTCACTTCAAATGAATGGCTGATCCAACGGTTAGAAACAATCAGTGCTGTTGTTCTATCTGCTGCTGCACTTTTCATGGTTTTGCTTCCACCCGAAACTTTCCCGGCCGGATTTATTGGCATGGCACTCTCTTATGGCCTTTCACTGAACAATTCCCTGGTATTTTCAATTCAATTTCAATGCAATCTTGCAAACTATATAGTATCTGTAGAGAGGATAAATCAATACATGTACATACCAAGTGAAGCCCCAGAAGTTATAGAAGGAAATCGCCCTCCGGTTAATTGGCCAACTGCTGGAAAAGTAGAAATAAGTAACTTGAAGATAAGATACAGGCCTAATGGACCACTAGTACTCCATGGAATTACATGCACATTTGAAGGAGGACACAAGATTGGTATTGTTGGTAGGACAGGAAGTGGGAAGTCCACTCTTATCAGTGCTTTGTTTCGCCTCGTGGAGCCGGCCGGCGGAAGAATTGTAATGGATGGCATAGACATATCCTCTATTGGCCTTCATGATTTGAGGTCACATTTAGGTGTTATACCTCAGGATCCTACTCTTTTTAATGGAACAGTTAGATATAATCTGGATCCTTTGTCTCAACATTCTGATGAAGATATATGGGAGGTTCTGGGAAAGTGTCAGTTGCGAGAAGCCGTGCAAGAAAAAGAAGGCGGCTTAGACTCCTCAGTTGTTGAAGATGGATCAAATTGGAGCATGGGACAAAGGCAGTTATTCTGTCTAGGCCGCGCCCTTTTGAGGCGAAGTAGGATATTGGTGTTGGATGAAGCAACCGCGTCAATTGATAATGCAACAGATCTGATTCTGCAGAAAACAATTAGAACAGAATTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTCTCCATCAGTGATGGAAAACTGGTAGAGTATGATGAGCCATTGAAGTTAATGAAGAGAGAAGGTTCATTGTTTGGGAAGCTTGTGAAGGAATACTGGTCTCATTTTCAGTCTGCAGAATCTCATTGA 4446 0.4058 MDDFWSLICMDSDCSKGRENPFCDYFKFLQDQSKCINHFLIICFDILLLIMLAFTMIKRTSSTPFHGRTRAERYSNLQLVSAITNGVLGLVHLCLGIWILEEMIRKNHTALPLNWWLVEFFQGITWLVAAFLVVSLRLRQYPVTSLRISSVLLLIASSILCSLSLFNAISSRGLSLKIALDVLSFPASILVLLCTFKVCEHEEKFKEKDESLYAPLNGQLNETDSVSDLVTPFANAGFFSWMTFWWLNPLMKKGKEKALEDEDIPKLREPDRAESCYLLFMEQLNKQKQKEPSLQPSVFWTIMSCHWREIWISGFFAFLKVVTLSCGPLLLNAFILVAEGNESFKYEGFVLAISLFFAKIIESLSQRQWYFRSKLVGMKVRSLLTAAIYKKQLKLSNAARLEHSGGEIMNYVTVDAYRIGEFPFWFHQMWTTSLQICIALVILVRAIGLATIASMVVIILTVLCNAPLAKIQQKFQSKLMVAQDERLKANSEALVNMKVLKLYAWEKHFKKAIEGLRNVELEMLSAVQSRKAYNIFLFWSSPILVSAASFAACYFLEIPLHANNVFTFVATLRLVQEPITAIPDVIGVVIQAKVAFARIVKFLEASELQNSNCRKSCVDDSLRGSISIKSADFSWEDNVSKPTLRNINLEVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIEVYGSFAYVSQTAWIQSGTIRENILFGSELDPQRYKETLYRSSLLKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFKEYIMEGLAGKTVLLVTHQVDFLPAFDSVMLMLDGEILQAAPYHHLLESSQEFQELVEAHKKTAGSDHQVDTPSAKRDSNSGREIKQDFLEKKLHASNDNKLIKQEEREIGDTGLKPYIQYMNQMKGYIYFAAATLCHLLFVLGQILQNSWMAANVDNPHIQTLKLILVYLLLGVVALVFMLIRTFVIVALGLQSSKYLFSQLMNSLFRAPMSFYDSTPLGRILSRVSADLSIVDLDIPFYLAYTVGGTINFYSNLAVLAFVSWQVLFVAIPLVLVAIRLQNYYFATAKALMRMNGTTKSFVANHLAETNAGAVTIRAFKEEDRFFKKNLDLIDVNASPFFHSFTSNEWLIQRLETISAVVLSAAALFMVLLPPETFPAGFIGMALSYGLSLNNSLVFSIQFQCNLANYIVSVERINQYMYIPSEAPEVIEGNRPPVNWPTAGKVEISNLKIRYRPNGPLVLHGITCTFEGGHKIGIVGRTGSGKSTLISALFRLVEPAGGRIVMDGIDISSIGLHDLRSHLGVIPQDPTLFNGTVRYNLDPLSQHSDEDIWEVLGKCQLREAVQEKEGGLDSSVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLSISDGKLVEYDEPLKLMKREGSLFGKLVKEYWSHFQSAESH 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc317g00001 1481 SMART AAA_5 1261 1453 IPR003593 GO:0016887
Stsc317g00001 1481 SMART AAA_5 653 826 IPR003593 GO:0016887
Stsc317g00001 1481 MobiDBLite consensus disorder prediction 852 872 - -
Stsc317g00001 1481 Pfam ABC transporter transmembrane region 311 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc317g00001 1481 Pfam ABC transporter transmembrane region 919 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc317g00001 1481 CDD ABCC_MRP_domain1 626 826 - -
Stsc317g00001 1481 Gene3D - 621 855 IPR027417 -
Stsc317g00001 1481 CDD ABCC_MRP_domain2 1233 1453 - -
Stsc317g00001 1481 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524|GO:0016887
Stsc317g00001 1481 SUPERFAMILY ABC transporter transmembrane region 299 599 IPR036640 GO:0005524|GO:0016020
Stsc317g00001 1481 FunFam ABC transporter C family member 3 1218 1470 - -
Stsc317g00001 1481 FunFam ABC transporter C family member 5 884 1216 - -
Stsc317g00001 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc317g00001 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 849 IPR027417 -
Stsc317g00001 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1462 IPR027417 -
Stsc317g00001 1481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 234 1469 - -
Stsc317g00001 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 931 1198 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc317g00001 1481 CDD ABC_6TM_ABCC_D2 921 1210 IPR044726 GO:0140359
Stsc317g00001 1481 Gene3D - 1219 1470 IPR027417 -
Stsc317g00001 1481 Gene3D ABC transporter type 1, transmembrane domain 883 1216 IPR036640 GO:0005524|GO:0016020
Stsc317g00001 1481 Gene3D ABC transporter type 1, transmembrane domain 281 607 IPR036640 GO:0005524|GO:0016020
Stsc317g00001 1481 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Stsc317g00001 1481 SUPERFAMILY ABC transporter transmembrane region 914 1215 IPR036640 GO:0005524|GO:0016020
Stsc317g00001 1481 FunFam ABC transporter C family member 10 608 862 - -
Stsc317g00001 1481 Pfam ABC transporter 1252 1400 IPR003439 GO:0005524
Stsc317g00001 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1469 IPR003439 GO:0005524
Stsc317g00001 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 849 IPR003439 GO:0005524
Stsc317g00001 1481 FunFam ABC transporter C family member 10 294 607 - -
Stsc317g00001 1481 Pfam ABC transporter 644 778 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc317g00001 Stsc-Chr317 6255 11913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc317g00001 620 871 Calmodulin-binding Proteins AT2G36910 30.037 4.86e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc317g00001 K05666 - gmx:100811468 2253.79