Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31799g00001 ATGGAGCTTTCTCAACTTGGTTTTCTTGAGGAACTACTACTACTGCCTCCAAGTAGAGTTGTAGGAGACACATGTTGGAATGGTTTCAATGATCTGCTCCCTAGTACTACTGCTTCTGCTTCTGCTTCTTGGAGCTTTGACTCTCTTGATGATAACCCTTCTTTCAATCCCTCATTTTCTTCATTCTCAACACCATTAGACCACAGATTTGACTCATCTTATGCTGCTTCATTTCCATTTCTTGATGGCTTCACAATGCCAACAGACCTTGATCACTCACCACCACTTTTCCCACAACAACAAGACAACAACAACCACAACCACCCTTTGGTGGAAGAAGAAGAAGAAGAGGAGGAGCTTGGGCTACCTGTTAATGATAATAATCAGAGCAGCTTGGAAGAGAGGAACAGTGGTAGATGCAAACTTGAGGAACAACAAGCTCTTGAGCTCCCAGATGTAGTGTTCAACATGGGAATTTGTGGAGACAAAAAGGTAGCAAAGTCAAAGAAACTTGAAGGGCAGCCCTCCAAGAATCTCATGGCAGAAAGGAGAAGAAGAAAGCGTTTGAATGATCGTCTTTCAATGCTCAGGTCTATTGTCCCTAAGATAAGCAAGATGGACAGGACCTCCATTCTAGGAGACACCATAGATTACATGAAAGAGCTTCTAGAGAGGATTGCTAAGTTGCAAGAAGAAACAATAATGGAAGAGGAGGGAAAGAATCAGATACACCTCTTGGGAGTTTCAAAAGAGCTAAAGCCAAATGAAGTAATGTTCAGAAATTCCCCTAAGTTTGATGTTGAGAGGAGGGACCATGACACAAGGATCAGCATCTGCTGTGCTACAAAGCCAGGGTTGTTGCTGTCAACAGTGAACACCCTAGAAGCATTAGGCCTTGAAATTCACCAATGTGTCATAAGCAGCTTCAATGATTTCTCAATGCAAGCATCTTGCTCAGAGGGTGCTGAGCAAAGAAACTGTATTAGCACAGAAGATGTAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGAAGATGTGTCTAA 1047 0.426 MELSQLGFLEELLLLPPSRVVGDTCWNGFNDLLPSTTASASASWSFDSLDDNPSFNPSFSSFSTPLDHRFDSSYAASFPFLDGFTMPTDLDHSPPLFPQQQDNNNHNHPLVEEEEEEEELGLPVNDNNQSSLEERNSGRCKLEEQQALELPDVVFNMGICGDKKVAKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIAKLQEETIMEEEGKNQIHLLGVSKELKPNEVMFRNSPKFDVERRDHDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCSEGAEQRNCISTEDVKQALFRNAGYGGRCV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31799g00001 348 Pfam Helix-loop-helix DNA-binding domain 179 222 IPR011598 GO:0046983
Stsc31799g00001 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Stsc31799g00001 348 Coils Coil 212 232 - -
Stsc31799g00001 348 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 82 342 - -
Stsc31799g00001 348 SMART finulus 179 228 IPR011598 GO:0046983
Stsc31799g00001 348 MobiDBLite consensus disorder prediction 89 139 - -
Stsc31799g00001 348 CDD ACT_UUR-ACR-like 274 315 - -
Stsc31799g00001 348 Gene3D - 165 238 IPR036638 GO:0046983
Stsc31799g00001 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 235 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31799g00001 Stsc-Chr31799 6797 8765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31799g00001 27 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 46.132 1.37e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc31799g00001 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31799g00001 - - gmx:100806571 401.364