Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31772g00001 ATGTCTGAGTTATTCCCTGCCGGAGATGTTGCAAATAGGAAGCTCAAGCGCAAGTTGGAGGAGCCACCAACCATGGAAGACGAAGACTCATCAAAGGTGTTACTTTCTTTGAGTCTTGGCCTCAACAACATGGAAGGAAATGGTGGTGGTGACTCATCCTCCTCTAGGCTCAACGCATTCAAATCCTTGAAACCTTCGTCATCACGTGTTGATGAAAACCAAAGGCAAGAACAACAACAACAACAACGCTTGTTTCCTTGCAAATTTTGTGACAAAAAATTTGCAAGCTCGCAAGCTTTGGGAGGACATCAAAACGCTCACAAGCGTGAGAGGATCCTCTCGAAAATGGACAAAATGCTTAACATGGGAACATTTCCTATTGATGCTAGTCATCAATTATGTTCATTCCCAACCGCAACAAATTATATTCCACCCTATCGAGGCTCGATGTCTCTTTACCAAGGCGCACATATGCACCACATAGTTCATCATATGCCTTCCGCCGCCTTGCCTGGTTTTCGTTTTGGATCGAACTATGGAAACCAGGGTTTACACAACATTCCTCAGAGCTCCCACCGCCACGGCGGCAGCCACCAACGAGATGCTACTGGATTTGGTCTCGGACTTTGGCTTCCCCTTGGAGGTTCGGTGAATTGGCGCTACAAACTGGAGACGGAGGATGCTTCTGAGAACGAGGAGAAGGCGCTATCGAGGAGGGCGTCCGACAGAATGAGGATCCTATTAAACAACAATTTTTATTTTGCCGAACTAAAGGCTATGGACGCAGCAAAGAAAGAATCCTCTTTTCTCTTTTTCAATTTCATCCTTTGTTGCGAGAATCCAATCCAAGAGGGGGATTCCATGAGCCGTCTCTGTTTGAAGGATGAAGGGAGAAGAGAACCAGAAACATTGAGACCATTGGCACTCTCTAAACAGGTTGTCCACAGTGGCTTCCTTCTCAAAACCGGTTCTGGGGCTCCAAATCTTGAAATCGTTTTGATTAGGAAGCCAAGGATCTTTCCAAATTTTGGTGTCTTTGCCGTTGCCTATTTTCCAAACTCTTCCCAGCTCTAA 1074 0.459 MSELFPAGDVANRKLKRKLEEPPTMEDEDSSKVLLSLSLGLNNMEGNGGGDSSSSRLNAFKSLKPSSSRVDENQRQEQQQQQRLFPCKFCDKKFASSQALGGHQNAHKRERILSKMDKMLNMGTFPIDASHQLCSFPTATNYIPPYRGSMSLYQGAHMHHIVHHMPSAALPGFRFGSNYGNQGLHNIPQSSHRHGGSHQRDATGFGLGLWLPLGGSVNWRYKLETEDASENEEKALSRRASDRMRILLNNNFYFAELKAMDAAKKESSFLFFNFILCCENPIQEGDSMSRLCLKDEGRREPETLRPLALSKQVVHSGFLLKTGSGAPNLEIVLIRKPRIFPNFGVFAVAYFPNSSQL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31772g00001 357 MobiDBLite consensus disorder prediction 1 81 - -
Stsc31772g00001 357 MobiDBLite consensus disorder prediction 35 81 - -
Stsc31772g00001 357 SUPERFAMILY beta-beta-alpha zinc fingers 82 112 IPR036236 -
Stsc31772g00001 357 MobiDBLite consensus disorder prediction 10 28 - -
Stsc31772g00001 357 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 185 IPR044246 GO:0009788
Stsc31772g00001 357 Pfam C2H2-type zinc finger 85 109 - -
Stsc31772g00001 357 Gene3D Classic Zinc Finger 65 124 - -
Stsc31772g00001 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Stsc31772g00001 357 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31772g00001 Stsc-Chr31772 2559 7307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31772g00001 21 122 C2H2 Transcription Factor Family AT1G80730 43.925 4.15e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc31772g00001 zf-C2H2_6 1.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31772g00001 - - adu:107458588 216.853