Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31747g00002 ATGGCTAGCTCGGAAATAGAAGAGGAGCCAATGCTGTCAGATATGCAATCATCATCTCATGAACTCAAGTATCCGAGTTTCCGGAGAATCCTATCAAGGAGACAAAGCGCATCAATGTACATTCCCATGGTGTCTATAGAGCCAGATTACAACAGAGAAGAAGCAAGTCTTGGAGGTCATAGTAATCGTCCTCAACTTAACAGTTTTAGAACCTTCCCACCCAAGATTGATGAACTGTATACTACCCATGGAGCTGCAAGTATTTTCAAGCATCAGAGTAGTACTAGTAGAGTTGTGACTGAAAACACAAGTGAAAACAATTCGAACAACAACAATGATTGGGAACCTATACCACCAGGAGTTAGCAGTGATCAACAGGGAATAATTTGTAAGAATTATTTTTGTATTAGGGTCGGTACTCACGATAATGATCAGCAAGGAATTCCGAGAAATCCAAGTAGATTTGATCAGGAGTACCATGATGACATTCATGGCGATGAGGAGGGTTTTGTAAAAAAAGTGTTACGGTTTTTCAACTCTTCGTGTATTCCTAAAGTTATAAGCCCCCACAGTAAGAGAGTCAAGCAATGGAACAAGATTATAGCTATCTTTTGCTTGGTGGCAATATTTCTGGATCCATTATTTTTCTTCATACCCCATGTACAAAAGGATTTCAATTGTACAGTTATCAATTGGACAAGGACAATACCACTTGTTGTACTTAGAAGCTTGAATGATTTCGTGTATTTCTTGAACATACTTCTTCAGTTTAGGTTGGCTTATGTTTGTGCTAGTGCTGGATCAAGGGTGATTGAGATAGTTGACCAACCAAAAGAGATTGCTTTACATTATTTACATAGCTATTTTCTTCTTGATTTATTTGTAGTGATTCCTCTGCCGCAGATAATTATATTGTTTGTGCTACCAAAGTACTTGGGTTCATCAGGAGCAAATCATTCAAAGAATCTTATATCTGCAGTGATCCTTGTGCAATACATTCCCAGATTATTCAGGTTTTTGCCGTTGCTAATTGGCCAATCTCCAGCAGGAATCATATTTGAGTCAGCGTGGGCAAGTTGCACTGTAAATCTTCTCATTTTTGTGCTTTCTGGCCATATTGTTGGCTCTTGCTGGTATCTCTTTGGTCTGCAGAGAGTTAATCAATGTTTGCTAGAGGCTTGCCATAACGCTAAGATTACTGGTTGCATGAAATATGTGGATTGTGGACATGGACATTCCTCTTACCAGACATCAGATTTGTGGAAAAACAATGTAAATGCCACAGATTGTTTGAATTCCTCGTCTGGTGCTTTTGATTATGGGATCTATGCCGATGTTGTTCGACTTACTACAGGAACCAACATGGTCAGAAAATATTTGTATTCACTTTTTTGGGGCTTCCAGCAAATTAGTACTCTTGCTGGTAATCTAACCCCAAGTGATTTTGAGTTCGAAGTCCTTTTCACAATGGTAATCATCGGACTGGGGCTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTTCAAGGTCTTGGACAAAGGACACTAGAAATGCAAATTAGAAGCCGTGAAGTTGAGCAATGGATGAACCAGTTTCACTTACCAGAAGATCTAAGAAAGAGAATCAGACATGCTGAAAGGTATCATTGGGTTGCAACAATAGCGATGAATGCACAAATGCTTATGGAGAATATGCCAGAAGATCTTCAGAGAGACATAAGACGCCATCTCTTCGAATTTATTAAGAAAATTCGAATTTTTAGCTTAATGGATGAGCCTATTTTAGACGCCATTTGTGAGAGGCTCAGGCAAAAAGTATACTTCAAAGGAAGTACTGTTTTGCATCCTGGTGATTTGGTAGAAAAAATGTTCTTTGTTTTGCGTGGAGAATTGAAGAGCATTGGTGAAGATGGGACTAGAGTTTTGTTAACTGAAAGGGATGCTTGTGGTGAAGAACTTCTAATATGGTGTCTTGAAAATTCTTCAGTCAGCACAGATGGTAAAAAGGCATGGCTTCCTGGACCAAGGTTGCTTAGTAGGAGGACAGTAACGTGCTTAACAAATGTGGAGGTATATTCAATTGGAGCTGCTGACCTGGAAGCAATTACAATCCGTTTCACAAGATTCTTGCGGAATCCAACTGTTCAAAGAGCATTGAGGTACCAATCACTGTATTTGAGATCCGTTGCGGCAACCCGGATTCAGGTTCAATGGAGATGGTATAGGGAGAGAAACCTAAAACGTGCTGCCTCACGTGCAAATTACTACTAA 2280 0.3956 MASSEIEEEPMLSDMQSSSHELKYPSFRRILSRRQSASMYIPMVSIEPDYNREEASLGGHSNRPQLNSFRTFPPKIDELYTTHGAASIFKHQSSTSRVVTENTSENNSNNNNDWEPIPPGVSSDQQGIICKNYFCIRVGTHDNDQQGIPRNPSRFDQEYHDDIHGDEEGFVKKVLRFFNSSCIPKVISPHSKRVKQWNKIIAIFCLVAIFLDPLFFFIPHVQKDFNCTVINWTRTIPLVVLRSLNDFVYFLNILLQFRLAYVCASAGSRVIEIVDQPKEIALHYLHSYFLLDLFVVIPLPQIIILFVLPKYLGSSGANHSKNLISAVILVQYIPRLFRFLPLLIGQSPAGIIFESAWASCTVNLLIFVLSGHIVGSCWYLFGLQRVNQCLLEACHNAKITGCMKYVDCGHGHSSYQTSDLWKNNVNATDCLNSSSGAFDYGIYADVVRLTTGTNMVRKYLYSLFWGFQQISTLAGNLTPSDFEFEVLFTMVIIGLGLLLFALLIGNIQNFLQGLGQRTLEMQIRSREVEQWMNQFHLPEDLRKRIRHAERYHWVATIAMNAQMLMENMPEDLQRDIRRHLFEFIKKIRIFSLMDEPILDAICERLRQKVYFKGSTVLHPGDLVEKMFFVLRGELKSIGEDGTRVLLTERDACGEELLIWCLENSSVSTDGKKAWLPGPRLLSRRTVTCLTNVEVYSIGAADLEAITIRFTRFLRNPTVQRALRYQSLYLRSVAATRIQVQWRWYRERNLKRAASRANYY 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31747g00002 759 Pfam Ion transport protein 197 518 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc31747g00002 759 SUPERFAMILY Voltage-gated potassium channels 189 512 - -
Stsc31747g00002 759 SMART cnmp_10 589 724 IPR000595 -
Stsc31747g00002 759 CDD CAP_ED 589 722 IPR000595 -
Stsc31747g00002 759 Gene3D Helix hairpin bin 518 581 - -
Stsc31747g00002 759 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 180 752 - -
Stsc31747g00002 759 Gene3D - 174 513 - -
Stsc31747g00002 759 ProSiteProfiles cAMP/cGMP binding motif profile. 589 668 IPR000595 -
Stsc31747g00002 759 MobiDBLite consensus disorder prediction 91 119 - -
Stsc31747g00002 759 SUPERFAMILY cAMP-binding domain-like 516 713 IPR018490 -
Stsc31747g00002 759 Gene3D Jelly Rolls 587 711 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31747g00002 Stsc-Chr31747 2310 12999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31747g00002 1 667 Ion Channels AT3G17700 48.676 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31747g00002 K05391 - gmx:100781973 840.876