Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31739g00002 ATGGCCGCACTATTATCCATGCCTTCTTCCTCTTCCACTGATCTCTCTGCCTCTCCAACCATTCCTAAATCCTTCACTGGCCTCTGTAAGCCGTTCCATTCAAGGGTACCTACTTCCATTCCCGTGCACTCTAGAAGAAGAAGACCTACCTTCTTTGTAAGGGCTACTGTTGTAAAGTGGCGATGTCCAAAGCAAACCGTACCATACAACCCTGATTCCGGATTCAGTTGTCCAAAGAAAAGCCTGCCACCCGATGCTGATGCCGGTTTTGGATTTCCAAAGAAAACCAGACCTCCCAACACTGATGCTGGCATTGGATGTCCGAAGGAAACCATACCTCCTAACCCTGATACCAGTTTCCAAAAGATGGTCCTTTATTTAGAGTCCATTGGTCTCGACTCTTTCTCAGTTATCGAAAACCATCCGAAGTTGATCGCTGCCTCCCTTGATGACATTAAATCCACAGTGGAATACATTATGTCCTTGGATTTCACTGCGATCGAGTTTCGACGCATAGTTGGCATGTGTCCAGAAGTTCTTACCACCCATGTCTCGGACATCATACCCGTCTTCACCTTCCTTCTCCGCGAGGCTCATGTAAAAGGCTCAGATATTAAGAGGGTCATACATCGTCGCCCCAGGTTGCTCGTTTGCAGTGTCAATAACCAACTCCGTCCGACGCTTTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAGTAGGCACACTGATTTGCTATCGTGTAGTGTCCAAGAAAAGCTTATACCCCGAATAGATTACTTCGAGAATATCGGGTTTTCTCGACGCGATGCAACTACAATGTTCCGAAGATTTCCTCCACTGTTTTGTTATAGTATTAAGAATAACCTGGAGCCGAAATATAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGAAGGAGTTCCCGCAGTATTTCTCGTTTAGCTTAGAGAACCGAATTAAGCCGAGGCATAAACTCTGCGTCGAAATGGGGGTGTGTTTCCCTCTACCTGTATTGTTAAAGATGACCGAAATGAGCTTTCGGGATAGGTTAGATGTATGTGTAAATTCTTCAACACCCTTGAAAAGTTCTCCTCTGTGGTGTAATAATGCTTCTGATATTCAAGTATAG 1140 0.45 MAALLSMPSSSSTDLSASPTIPKSFTGLCKPFHSRVPTSIPVHSRRRRPTFFVRATVVKWRCPKQTVPYNPDSGFSCPKKSLPPDADAGFGFPKKTRPPNTDAGIGCPKETIPPNPDTSFQKMVLYLESIGLDSFSVIENHPKLIAASLDDIKSTVEYIMSLDFTAIEFRRIVGMCPEVLTTHVSDIIPVFTFLLREAHVKGSDIKRVIHRRPRLLVCSVNNQLRPTLYFLQSIGIEEVSRHTDLLSCSVQEKLIPRIDYFENIGFSRRDATTMFRRFPPLFCYSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKLCVEMGVCFPLPVLLKMTEMSFRDRLDVCVNSSTPLKSSPLWCNNASDIQV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31739g00002 379 Pfam mTERF 121 200 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 Pfam mTERF 242 350 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 FunFam Transcription termination factor MTEF1, chloroplastic 194 358 - -
Stsc31739g00002 379 Gene3D Transcription termination factor 3, mitochondrial 186 357 IPR038538 -
Stsc31739g00002 379 PANTHER CGI-12 PROTEIN-RELATED 125 355 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 SMART mt_12 135 165 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 SMART mt_12 238 267 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 SMART mt_12 272 304 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 SMART mt_12 305 336 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Stsc31739g00002 379 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31739g00002 Stsc-Chr31739 9245 12797 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc31739g00002 mTERF 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31739g00002 K15031 - gmx:100794678 508.449