Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31735g00002 ATGGGGACCCCCAATGGGGACGTGGACGACAAGAAGAAGAGGAGGAGGAGGAAGGAGGAGGAGGACCCTAAGTTAATGGAACAGCAAGAACAACACAACAAAAAGAAGGAGGAGGAGGACGCGGAGGAGGAGGAGGATCCCAATGCAGTTTGGAGGTTTAGGATTTCGGAGCCATTGAGGGAGAGGCTCAAGGGGAAGGGAATAGAGTCTCTGTTTCCAATTCAGGCCATCACTTTTGATACCATTCTTGATGGCTCTGATCTGGTTGGTCGCGCTCGAACCGGTCAGGGCAAAACGCTGGCGTTTGTCTTGCCCATATTAGAGTCTTTGACAAACGGTATGGCTAAAGCATCCAGAAAGACTGGCTATAGGAGGCCTCCAAGCGTTCTTGTTCTTTTGCCCACCAGGGAATTGGCCTCTCAGGTTCACTCTGATTTTGAATTTTATGGTGGCGCCGTCAGATTAACATCCTGCTGTCTATATGGTGGAGCGCCTTATCAGAGCCAAGAAATTAAGCTCAAGAGAGGTGTTGATATTGTTGTTGGCACACCTGGCCGCATTAAGGATCATATAGAGAGGGAAAATATTGACCTAAGCCAACTTAAGTTTCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTGGGTAAGGTAGAGAACATTAGTAAAGTCCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAGACAGCTGACCTTGTAGGAAACACAAAAATGAAGGCAAGCACCAATGTTAGGCATATTGTTCTTCCCTGCACTACTTCTGCCAGGTCCCGCCTTATTCCAGACATCATCCGCTGTTATAGCAGCGGAGGACGGACAATTATATTTACCGAGACAAAGGAGTCTGCTTCACAACTTGCAGGTTTCTTGCCTGGAGCACGAGCTCTCCATGGTGACATACAGCAAGCGCAACGTGAGGTTACATTGTCCGGCTTCAGGTCTGGAAAATTCATGACATTAGTTGCTACAAATGTGGCGGCTCGAGGTCTGGATATCAATGATGTCCAATTAATTATACAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCAGGGCGCACGGGAAGAGCAGGTAATAGTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAGTATATCTAAAATCGAAAGAGAATCCGGTGTAAAATTCGAACATATATCTGCTCCTCAGCCTCATGATATTGCTAAAGCCATAGGTAGGGAAGCTGCTGAGATGATCAATCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCCGGTTTGTCAGTTGTTGAATTGCTTGCAAAGGCTCTTGCCAAGGCTGTTGGCTATACTGAGATGAAGAAAAGATCTCTTCTCACTTCCATGGAGAACTATGTTACATTACTTCTTGAGATTGGGAAACCTATCTTCACTCCAACTTTTGCATATGGAGTGTTGAGGAGATTCTTGCCCGAAGAGAAGGTTGAGGCAGTGAAGGGTCTCACTCTCACTGCTGACGGAAGTGGCTTTGTCTTTGATGTACCAGCTGAAGATTTAGATACATATCTTGCAGGTAAGGAAAAGGCCTCAAATGTGAAGTTAGAAGTATTGACTGTGCTGCCACGTTTGCAAGAAAAAGACCAGTCAAGAGGTGGCAGATTTGGTGGTGGTGGTGGAGGTGGTCGTCGTGGTGGTTTTGGCGATAGAAATGTGGGGAGCAGGTTTTCAGGGGGAAGAGGTGGTAGCGGCAGGAATGTTAGAGTTTCCGGTGACAGATTCTTTAATAACGGTGGTGTTGGGAGAGGTCGTGGCAACAGGAGTGGAAAGAGATGGTGA 1935 0.4636 MGTPNGDVDDKKKRRRRKEEEDPKLMEQQEQHNKKKEEEDAEEEEDPNAVWRFRISEPLRERLKGKGIESLFPIQAITFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGMAKASRKTGYRRPPSVLVLLPTRELASQVHSDFEFYGGAVRLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVENISKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTNVRHIVLPCTTSARSRLIPDIIRCYSSGGRTIIFTETKESASQLAGFLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLYDPRRSSISKIERESGVKFEHISAPQPHDIAKAIGREAAEMINQVSDSVIPAFKSTAEELLKNSGLSVVELLAKALAKAVGYTEMKKRSLLTSMENYVTLLLEIGKPIFTPTFAYGVLRRFLPEEKVEAVKGLTLTADGSGFVFDVPAEDLDTYLAGKEKASNVKLEVLTVLPRLQEKDQSRGGRFGGGGGGGRRGGFGDRNVGSRFSGGRGGSGRNVRVSGDRFFNNGGVGRGRGNRSGKRW 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31735g00002 644 Pfam Helicase conserved C-terminal domain 296 393 IPR001650 -
Stsc31735g00002 644 Gene3D - 275 500 IPR027417 -
Stsc31735g00002 644 CDD DEADc 59 256 - -
Stsc31735g00002 644 Gene3D - 501 571 - -
Stsc31735g00002 644 MobiDBLite consensus disorder prediction 1 39 - -
Stsc31735g00002 644 Gene3D - 4 261 IPR027417 -
Stsc31735g00002 644 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 205 213 IPR000629 -
Stsc31735g00002 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 405 IPR027417 -
Stsc31735g00002 644 CDD SF2_C_DEAD 276 402 - -
Stsc31735g00002 644 Pfam DEAD/DEAH box helicase 72 249 IPR011545 GO:0003676|GO:0005524
Stsc31735g00002 644 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 11 450 - -
Stsc31735g00002 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 261 IPR014001 -
Stsc31735g00002 644 MobiDBLite consensus disorder prediction 580 644 - -
Stsc31735g00002 644 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 432 IPR001650 -
Stsc31735g00002 644 Coils Coil 25 46 - -
Stsc31735g00002 644 CDD GUCT_RH7_like 489 574 - -
Stsc31735g00002 644 MobiDBLite consensus disorder prediction 1 48 - -
Stsc31735g00002 644 Pfam GUCT (NUC152) domain 482 577 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc31735g00002 644 SMART helicmild6 316 393 IPR001650 -
Stsc31735g00002 644 SUPERFAMILY RNA-binding domain, RBD 486 569 IPR035979 GO:0003676
Stsc31735g00002 644 FunFam DEAD-box ATP-dependent RNA helicase 7 499 571 - -
Stsc31735g00002 644 SMART ultradead3 67 279 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31735g00002 Stsc-Chr31735 4362 7482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31735g00002 85 435 Eukaryotic Initiation Factors Gene Family AT1G72730 30.056 5.25e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31735g00002 K16911 - gmx:100820207 908.672