Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31729g00002 ATGGAAGGTGATGATGGAAAACAACCAACCCACAAAGAACCATGCAATAACAATAGTAGCAATAATAACAATAATAATGAATTGTTTGAGCAAGAGAACTTTGATTATATTCTTGCAATTAGCTTGCAAGAACAAGAGGGAGGATCAACATACACAACCTTAGCAACCATTACAAGCGAAAATGATGAAGAAGAAGGCGAATACGACGAAGATGAATCCTCTTTGGGGGATGAAGAAGAAGATGACGATTCTCAGTATTATTTAGAAAGCCAAGACTTTGAGGAGTCAGAAACTCAGTTTCTTGAAGGCGAAGGAAGCAACTACGACGACGAGGTCGAAGAAGAAGAGGAGGAGATGGAAGAAGATGAAATTGATCCAGATGAAATGTCGTATGAAGAGTTGCTTGAGTTGGGAGAGATCATAGGAGAAGAGAATAGAGGATTATCAGAAAATGAAGTGTCTTCTTGCTTATACCCTTACACTTGCAATTCTAATAGTGTTGATGGAAGAATTGATAGGTGTGTGGTTTGTCAGATAGAATATGAAGAAGGTGAATCAATGGTGGCACTTGAATGTAAGCACCCTTTTCATGAAGATTGCATAACCACATGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTGGTAATGAAGTTTCAACTAATAACAATAATAATACCAACAAGATAATGCCTAAGAATGACTAG 705 0.3745 MEGDDGKQPTHKEPCNNNSSNNNNNNELFEQENFDYILAISLQEQEGGSTYTTLATITSENDEEEGEYDEDESSLGDEEEDDDSQYYLESQDFEESETQFLEGEGSNYDDEVEEEEEEMEEDEIDPDEMSYEELLELGEIIGEENRGLSENEVSSCLYPYTCNSNSVDGRIDRCVVCQIEYEEGESMVALECKHPFHEDCITTWLQIKKVCPICGNEVSTNNNNNTNKIMPKND 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31729g00002 234 Coils Coil 105 125 - -
Stsc31729g00002 234 ProSiteProfiles Zinc finger RING-type profile. 174 214 IPR001841 -
Stsc31729g00002 234 MobiDBLite consensus disorder prediction 45 59 - -
Stsc31729g00002 234 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 219 IPR033276 GO:0004842|GO:0016567|GO:0046621
Stsc31729g00002 234 SUPERFAMILY RING/U-box 173 222 - -
Stsc31729g00002 234 SMART ring_2 174 214 IPR001841 -
Stsc31729g00002 234 MobiDBLite consensus disorder prediction 45 127 - -
Stsc31729g00002 234 MobiDBLite consensus disorder prediction 1 28 - -
Stsc31729g00002 234 MobiDBLite consensus disorder prediction 12 28 - -
Stsc31729g00002 234 Pfam Ring finger domain 173 214 IPR001841 -
Stsc31729g00002 234 MobiDBLite consensus disorder prediction 60 127 - -
Stsc31729g00002 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 231 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31729g00002 Stsc-Chr31729 5420 6187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31729g00002 121 218 C3H Transcription Factor Family AT3G63530 48.515 2.62e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31729g00002 K19045 - gmx:100526881 204.142