Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31704g00001 ATGGAAGTGGATGAAGAAAATGTGCCATCAAATCCTGCTTCTGAATCCTCCGTAGGAGCTTCCTCTGATGTTTCTGTGAATGCACCTCCACAACCACACCCAATTCAACCAATTATTCCACCCGTTATTCCTCTTTCTGCGGCTGTGCCACCTATGGCTCCAATTCCCACCATTCCTCCCCCTTCTGTTGTGCCTCCCATAGCCCCAATTCCGGCCCCTCCTCTGGTCCGTCCATTGGCGCCGCTCCCTCCTCGCCCGCCGCCGCCGCCTATTAGACCACCGGTGGTGCAAAATGGTGAGGTTGGTTCGGAGGATTCTGATTCGGACAACGATGATGCCGGTGGGAGGGTTAACCAGGGTTCCGGGGAGTATGAGATATCGGAGGAGAGTAGGGTGGTGAGGGAGAGGCAGGAGAAAGCAATGCAGGAGCTCATGATGAAGAGGCGTGCCGCTGCTTTGGCTGTTCCGACCAATGATATGGCTGTGCGTGCTCGCCTTCGCCGGCTTGGTGAGCCTATAACTTTGTTTGGTGAGAGGGAGATGGAGAGGAGGGATAGGTTGAGGATGATTATGGCGAAGCTGGATGCTGATGGCCAGCTGGAGAAGCTGATGAAGGCTCATGAGGATGAAGAGACTGCAGCTACTGCTGTCAGGGACGAGGATGAGGAAGAGATACAGTATCCCTTTTACACCGAAGGGCCAAAGTCTCTCCTTGATGCCAGGATTGATATTGCTAAGTATTCTTTAGTTAGGGCTGCATTGCGTCTTCAACGTGCCCGGAGAAGAAAAGATGATCCGGATGAAGATATAGATGCGGAGGTAGATTGGGCATTAAAGCAGGCTGCTAATTTGACTCTTGATGTCAGTGAAAATGGAGATGATCGACCGCTTTCTGGTTGCTCCTTCTCACGAGATGGAAAATCGCTTGCTACCTGTTCTCTAACTGGAGCTGCCAAGTTGTGGAGCATGCCTAATGTCGTCAAATCTTGTACCTTAAAGGGACACACAGAGCGTGCGACTGACGTTGCTTATTCTCCGGTAAACAACCATTTAGCTACTGCATCTGCTGATCGGACTGCAAAATATTGGAATGACCAGGGATCTCTCTTGAGGACATTCGAGGGTCATATTGATCGTCTTGCACGAATTGCTTTCCATCCATCAGGAAAGTACCTAGGCACTGCTAGCTTTGACAAAACATGGAGGTTATGGGACGTAGAAACAGGTGAGGAGTTGCTTCTTCAAGAAGGCCACAGTAGGAGTGTATATGGTTTAGCTTTCCATCAAGATGGATCATTAGCTGCATCTTGTGGACTGGATGCGTTGGCTCGTGTTTGGGATCTCCGAACTGGGCGAAGTATTCTTGCACTTGAAGGTCATGTCAAGCCGGTTCTTGGTATTTGCTTTTCACCTAATGGATATCATTTAGCCACAGGTGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCATGTACACCATTCCTGCTCACTCCAACTTAATATCACAAGTTAAGTTTGAGCCGCAAGAAGGTTACTTTTTGGTGACTGCCTCATATGACATGACAGCTAAGGTGTGGTCAGCCCGTGATTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACTTCTGTGGATGTTCTTGGTGATGGCAGTTATATTGCTACTGTCTCACATGATCGCACCATAAAATTGTGGTCCACCAATATGAGTAGTGAACAAACTATGGATGTTGATACTTGA 1764 0.4847 MEVDEENVPSNPASESSVGASSDVSVNAPPQPHPIQPIIPPVIPLSAAVPPMAPIPTIPPPSVVPPIAPIPAPPLVRPLAPLPPRPPPPPIRPPVVQNGEVGSEDSDSDNDDAGGRVNQGSGEYEISEESRVVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKAHEDEETAATAVRDEDEEEIQYPFYTEGPKSLLDARIDIAKYSLVRAALRLQRARRRKDDPDEDIDAEVDWALKQAANLTLDVSENGDDRPLSGCSFSRDGKSLATCSLTGAAKLWSMPNVVKSCTLKGHTERATDVAYSPVNNHLATASADRTAKYWNDQGSLLRTFEGHIDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLAFHQDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGICFSPNGYHLATGGEDNTCRIWDLRKKKSMYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVLGDGSYIATVSHDRTIKLWSTNMSSEQTMDVDT 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31704g00001 587 MobiDBLite consensus disorder prediction 1 133 - -
Stsc31704g00001 587 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 272 456 - -
Stsc31704g00001 587 PANTHER WD40 REPEAT PROTEIN 112 574 - -
Stsc31704g00001 587 Pfam WD domain, G-beta repeat 367 405 IPR001680 GO:0005515
Stsc31704g00001 587 Pfam WD domain, G-beta repeat 495 532 IPR001680 GO:0005515
Stsc31704g00001 587 Pfam WD domain, G-beta repeat 416 447 IPR001680 GO:0005515
Stsc31704g00001 587 Pfam WD domain, G-beta repeat 455 489 IPR001680 GO:0005515
Stsc31704g00001 587 Pfam WD domain, G-beta repeat 330 364 IPR001680 GO:0005515
Stsc31704g00001 587 Pfam WD domain, G-beta repeat 537 574 IPR001680 GO:0005515
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 541 IPR001680 GO:0005515
Stsc31704g00001 587 CDD WD40 296 574 - -
Stsc31704g00001 587 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Stsc31704g00001 587 SUPERFAMILY WD40 repeat-like 289 573 IPR036322 GO:0005515
Stsc31704g00001 587 Pfam pre-mRNA processing factor 4 (PRP4) like 162 188 IPR014906 -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 364 IPR001680 GO:0005515
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 532 - -
Stsc31704g00001 587 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 131 202 - -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 457 491 - -
Stsc31704g00001 587 Coils Coil 200 220 - -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Stsc31704g00001 587 Gene3D - 276 384 IPR015943 GO:0005515
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 364 - -
Stsc31704g00001 587 SMART WD40_4 283 322 IPR001680 GO:0005515
Stsc31704g00001 587 SMART WD40_4 366 405 IPR001680 GO:0005515
Stsc31704g00001 587 SMART WD40_4 492 532 IPR001680 GO:0005515
Stsc31704g00001 587 SMART WD40_4 450 489 IPR001680 GO:0005515
Stsc31704g00001 587 SMART WD40_4 408 447 IPR001680 GO:0005515
Stsc31704g00001 587 SMART WD40_4 325 364 IPR001680 GO:0005515
Stsc31704g00001 587 SMART WD40_4 535 574 IPR001680 GO:0005515
Stsc31704g00001 587 Gene3D - 385 461 IPR015943 GO:0005515
Stsc31704g00001 587 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 500 576 - -
Stsc31704g00001 587 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Stsc31704g00001 587 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Stsc31704g00001 587 PRINTS G protein beta WD-40 repeat signature 476 490 IPR020472 -
Stsc31704g00001 587 ProSitePatterns Trp-Asp (WD) repeats signature. 476 490 IPR019775 -
Stsc31704g00001 587 SMART pr04_2 157 210 IPR014906 -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 410 - -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 457 498 IPR001680 GO:0005515
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Stsc31704g00001 587 MobiDBLite consensus disorder prediction 9 29 - -
Stsc31704g00001 587 SUPERFAMILY PRP4-like 140 195 IPR036285 -
Stsc31704g00001 587 ProSitePatterns Trp-Asp (WD) repeats signature. 392 406 IPR019775 -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 583 IPR001680 GO:0005515
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 414 IPR001680 GO:0005515
Stsc31704g00001 587 MobiDBLite consensus disorder prediction 30 95 - -
Stsc31704g00001 587 Gene3D - 462 586 IPR015943 GO:0005515
Stsc31704g00001 587 Gene3D - 131 201 IPR036285 -
Stsc31704g00001 587 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31704g00001 Stsc-Chr31704 1142 4350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31704g00001 392 573 U-box Gene Family AT2G33340 23.684 1.31e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31704g00001 K12662 - gmx:100788948 843.188