Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc316g00007 ATGGCCGGAAAAGGAGAGGGACCAGCGATCGGAATCGATCTCGGAACCACGTACTCGTGCGTCGGAGTTTGGCAGCATGACCGTGTCGAGATCATCGCCAACGACCAAGGAAACAGAACAACGCCGTCTTACGTCGCATTCACCGACACCGAGCGTCTCATAGGCGATGCCGCCAAGAACCAGGTCGCCATGAACCCTATCAACACTGTCTTCGATGCTAAGAGGTTGATTGGTCGTAGATTCAGTGATCCCTCTGTGCAGAGTGATACTAAGTTGTGGCCATTCAAGGTTATTTCTGGACCTGCTGAGAAGCCTATGATTGTGGTCAACTATAAGGGTGAAGAGAAGCAATTTGCCGCAGAGGAAATCTCTTCTATGGTACTCATGAAGATGCGTGAGATTGCTGAGGCCTATCTTGGCAACTCAGTAAAGAACGCCGTTGTTACTGTCCCTGCTTACTTCAATGATTCTCAGCGTCAGGCAACCAAGGATGCTGGAGTTATTGCCGGTCTTAATGTCATGAGAATTATCAATGAGCCTACTGCTGCGGCTATTGCATATGGTCTTGACAAGAAGGCAACTAGCGTCGGTGAGAAGAATGTCTTGATTTTTGATCTTGGTGGTGGTACTTTTGATGTATCTTTGCTTACTATTGAGGAAGGTATCTTTGAGGTGAAAGCTACAGCGGGAGACACCCATCTTGGGGGTGAAGATTTTGACAACAGAATGGTCAACCACTTTGTTCAGGAGTTTAAGAGAAAGAACAAGAAGGACATAAGTGGCAACCCCAGAGCTCTTAGGAGGTTGAGGACAGCTTGTGAGAGAGCAAAGAGGACTCTCTCATCCACTGCCCAGACCACCATTGAAATTGATTCACTGTATGNNNNNNNNNNAAGGTTTGAGGAGCTCAATATGGATCTCTTCAGGAAATGTATGGAGCCAGTTGAGAAATGTTTGAGAGATGCTAAAATGGACAAAAGAAGTGTCCATGATGTCGTCCTTGTTGGTGGTTCAACTAGAATTCCCAAGGTTCAACAACTTTTGCAAGATTTCTTCAATGGTAAGGAATTGTGCAAGAGCATCAATCCTGATGAGGCTGTTGCCTATGGTGCTGCAGTTCAGGCTGCCATCTTGAGTGGTGAGGGTAATGAAAAGGTTCAGGACCTTCTCCTTCTTGATGTTACCCCTCTGTCACTTGGTTTGGAGACTGCTGGTGGTGTGATGACTGTCCTGATCCCCAGGAACACTACAATTCCCACAAAGAAAGAACAAGTTTTCTCAACATACTCAGACAACCAGCCTGGTGTGTTGATCCAGGTCTTCGAGGGTGAGAGAACAAGGACAAGGGATAACAATTTGTTGGGCAAATTTGAACTTTCAGGCATTCCTCCTGCTCCTAGGGGTGTTCCTCAGATCACTGTGTGTTTTGACATCGATGCCAACGGTATCTTGAATGTCTCTGCCGAAGACAAAACTACGGGCCAGAAGAATAAGATCACCATCACCAATGACAAGGGTAGACTTTCAAAGGAAGATATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAGTCTGAGGACGAAGAGCATAAAAAGAAGGTTGAAGCCAAAAATGCTTTGGAAAACTATGCCTACAACATGAGGAACACTGTGAAGGATGACAAGATTGGAGGAAAACTTGACCCAGCTGACAAGAAGAAGATCGAGGATGCCATTGAGCAAGCTATTCAGTGGCTAGACAGCAACCAGCTGGCAGAAGCAGATGAGTTTGAGGATAAGATGAAGGAACTCGAAAGCATCTGCAATCCAATCATTGCCAAGATGTACCAAGGTGGTGCTGGTCCTGATGTTGGTGGAGCTGGTGGAGCTGAAGATGACTATGCTCCCTCTAGTGGAAGTGGTGCTGGCCCTAAGATTGAGGAAGTCGACTAA 1932 0.4617 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQSDTKLWPFKVISGPAEKPMIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGNSVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYXXXXRFEELNMDLFRKCMEPVEKCLRDAKMDKRSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDDKIGGKLDPADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGAGPDVGGAGGAEDDYAPSSGSGAGPKIEEVD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc316g00007 643 Gene3D - 10 376 - -
Stsc316g00007 643 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc316g00007 643 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Stsc316g00007 643 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 383 536 IPR029047 -
Stsc316g00007 643 FunFam Heat shock 70 kDa 383 537 - -
Stsc316g00007 643 FunFam Heat shock 70 kDa 235 310 - -
Stsc316g00007 643 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 541 IPR029047 -
Stsc316g00007 643 SUPERFAMILY Actin-like ATPase domain 198 380 IPR043129 -
Stsc316g00007 643 FunFam Heat shock cognate 70 kDa protein 2 311 358 - -
Stsc316g00007 643 MobiDBLite consensus disorder prediction 609 643 - -
Stsc316g00007 643 Pfam Hsp70 protein 9 610 IPR013126 GO:0005524|GO:0140662
Stsc316g00007 643 Gene3D - 537 611 IPR029048 -
Stsc316g00007 643 FunFam Heat shock 70 kDa protein 71 126 - -
Stsc316g00007 643 PANTHER HEAT SHOCK PROTEIN 70KDA 9 575 IPR013126 GO:0005524|GO:0140662
Stsc316g00007 643 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Stsc316g00007 643 FunFam Heat shock 70 kDa protein 531 643 - -
Stsc316g00007 643 CDD HSPA1-2_6-8-like_NBD 9 379 - -
Stsc316g00007 643 Gene3D Actin; Chain A, domain 4 235 310 - -
Stsc316g00007 643 FunFam Heat shock protein 70 10 196 - -
Stsc316g00007 643 Coils Coil 513 533 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 209 219 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 388 407 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 469 485 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 361 381 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 146 166 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 58 66 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 36 48 - -
Stsc316g00007 643 PRINTS 70kDa heat shock protein signature 329 345 - -
Stsc316g00007 643 FunFam Heat shock 70 kDa protein 197 260 - -
Stsc316g00007 643 Gene3D - 71 126 - -
Stsc316g00007 643 ProSitePatterns Heat shock hsp70 proteins family signature 3. 332 346 IPR018181 -
Stsc316g00007 643 Gene3D - 192 358 - -
Stsc316g00007 643 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 535 616 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc316g00007 Stsc-Chr316 34724 37671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc316g00007 1 643 Calmodulin-binding Proteins AT3G12580 90.783 0.0 1207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc316g00007 K03283 - gmx:100798307 1187.17