Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc316g00006 | ATGACTTCGTTCCTGAAACCTGAGAATGCCCTAAAAAGGGCTGAAGAATTGATCAATGTCGGGCAGAAGCAGGATGCTTTGCAGACTCTGCACGACCTTATTACCTCGAAAAGGTACAGGGCGTGGCAGAAGACGCTCGAAAGGATTATGTTCAAGTATGTGGAACTCTGTGTAGATATGCGCAAGGGGCGGTTTGCGAAGGATGGGCTCATTCAGTACCGTATCATATGTCAACAAGTGAATGTTAGCTCCCTGGAGGAGGTTATCAAGCACTTCATGCACCTATCTACTGAAAAAGCCGAACAAGCCCGCAGCCAGGCGCAGGCATTGGAAGAAGCTCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCGGAGGACCTGATGCTGAGCTATGTCAGCGGCGAGAAAGGGAAGGACAGATCTGATCGTGAGCTTGTTACCCCTTGGTTTAAATTTCTTTGGGAAACATATAGGACAGTGCTTGAAATATTGCGCAACAACTCAAAGCTGGAAACTTTATATGCTATGACAGCTCATCGGGCTTTTCAGTTTTGTAAGCAATACAAGCGAACGACAGAGTTCCGCAGATTATGTGAAATCATAAGAAACCATTTGGCCAATCTAAATAAGTATCGTGATCAACGTGACAGGCCAGATCTTTCAGCTCCTGAGAGCTTGCAACTATATCTGGATACAAGATTTGAGCAGCTGAAAATTGCAACAGAACTTGAACTTTGGCAGGAAGCATTTAGATCTGTTGAAGACATACATGGACTGATGTGTTTGGTCAAGAAGACGCCAAAACCATCTTTGATGGTTGTTTACTACGCTAAGCTGACAGAGATCTTTTGGATAGGCTCAAGTCATCTTTATCATGCATACGCGTGGTTCAGGCTGTTTTTATTGCAGAAGAGCTTCAACAAGAATCTGAGTCAGAAGGATTTGCAATTGATAGCTTCATCAGTTGTTCTGGCTGCACTTTCCGTGCCTCCTCATGATCGCACTCATGGAGCATCTCATTTGGAACTGGAGCATGAAAAGGAGAGGAATTTGAGGATGTCTAACCTTATCGGGTTTAATATGGAAACTAAACCCGAAAGCAGAGAAATGCTTTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGATATTTACAACATTTTGGAACATGAATTCCTTCCCTCAGATCTTGCAGTAAAAGTGCAGCCATTGTTGACTAAGATATCGAAGTTAGGGGGTAAGCTTTCCACTGCTTCATCTGTCCCAGAGGTGCAGTTATCTCAGTACGTCCCTGCACTAGAGAAGTTAGCTACCTTGCGGTTGCTACAGCAGGTGTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGCATGGTCCCATTCTTTGATTTTTCTGTTGTGGAGAAGATTTCTGTTGATGCTGTTAAACAGAAATTCCTTTCGATGAAAGTTGACCACATGAGAAATGTTGTAATTTTCTGCAAGATGAGTCTTGAGTCTGATGGCCTGAGGGACCACTTGGCAAATTTTGCCGAACGCTTGAATAAGGCTAGACAGATGATTTATCCTCCTGAGAAGAAACCTTCGAAAATTGGAGCTTTGCTTCCAACTTTGTCTGAAGTTGTTGCCAAGGAACATAAACGCCTTCTAGCTCGAAAATCTATTATCGAGAAGAGGAAAGAAGAACAAGAGCGGCAGCTTCTGGAAATGGAACGTGAGGAAGAGTCAAAGAGGTTAAGAGTGCAGAAAATGAACGAAGAAGCTGAAAAATTGAGAGTTGCAACTGAATATGAGCAGAGAAAAAATCAGAGGATCCTCAGAGAGATAGAGGAAAGAGAAAAGGAAGAAACTAAAGCTTTGTATGAGGAAGCTGAGAAGCGCTTGTCTAGAAAGAAGGGTAAAAAGCCAATGATTGAGGGGCAAGAGATCGAATTGAGTCGACAACGTCATGAAGGAGATCTCAAAGAGAAGGAGAGGCTAGCCAGAATGATGGGCAATAAAGAGATATATCAAGAGAAAGTTGTCAGTCGGCGCCAGGCTGAATTTGACAGATTAAGGAAGGAAACAGAGGAGCGGATCTCTAGGATATTACAGTCCAGGAGACAGGACAGGGAAAGGTTGAGGAAGTGGAAGTATTATCTGAATGTGGAAGAAGAGAGGCAGCAAAAGTTGCATGAGGAGGAAGAAGCAAGGAAGCGTGAAGAGGCTGAGAGGCGAAGGAAGGAGGAAGCTGAACGCCTAGCAAAATTGGAAGAGATAGCTGAGAAACAGAGGCAAAGAGAGCGTGAACTGGAAGAAAAGGAAAGGCAAAGGAGAGAAGCATTGTTGGGTAGAGCTGCCGAGCCAGCTTCAAGGCCTACTGAGGCTCCTGCACGCCCACTTGAGTCTGGAACTGCTGCTCCAGCTGCGGCTGCAGCTGCTGCTGCACCTGCCCCAGGGAAATATGTCCCTAGGTTCCGGCGTGAGAAAACTGATAGTGGAGCTGCTCCTCCTGAAACAGACCGCTGGAATAACAGTAGCAGCCGGCCGGATGGTGGTGACAAGTGGGGGCGTAGTGAAGATCGCAGACCTGCATTTGGTTCTGGTAGGTCATCTTCAACCTGGTCATCCTCGAGGAACCGCTGA | 2670 | 0.4532 | MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLETLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYAKLTEIFWIGSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMSNLIGFNMETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYNILEHEFLPSDLAVKVQPLLTKISKLGGKLSTASSVPEVQLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMVPFFDFSVVEKISVDAVKQKFLSMKVDHMRNVVIFCKMSLESDGLRDHLANFAERLNKARQMIYPPEKKPSKIGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRVQKMNEEAEKLRVATEYEQRKNQRILREIEEREKEETKALYEEAEKRLSRKKGKKPMIEGQEIELSRQRHEGDLKEKERLARMMGNKEIYQEKVVSRRQAEFDRLRKETEERISRILQSRRQDRERLRKWKYYLNVEEERQQKLHEEEEARKREEAERRRKEEAERLAKLEEIAEKQRQRERELEEKERQRREALLGRAAEPASRPTEAPARPLESGTAAPAAAAAAAAPAPGKYVPRFRREKTDSGAAPPETDRWNNSSSRPDGGDKWGRSEDRRPAFGSGRSSSTWSSSRNR | 889 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc316g00006 | 889 | MobiDBLite | consensus disorder prediction | 734 | 889 | - | - | |
| Stsc316g00006 | 889 | MobiDBLite | consensus disorder prediction | 734 | 793 | - | - | |
| Stsc316g00006 | 889 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
| Stsc316g00006 | 889 | Gene3D | - | 351 | 495 | - | - | |
| Stsc316g00006 | 889 | Gene3D | - | 269 | 342 | - | - | |
| Stsc316g00006 | 889 | MobiDBLite | consensus disorder prediction | 846 | 860 | - | - | |
| Stsc316g00006 | 889 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 352 | 494 | - | - | |
| Stsc316g00006 | 889 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 864 | IPR027512 | GO:0005852 | |
| Stsc316g00006 | 889 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | IPR000717 | - | |
| Stsc316g00006 | 889 | Coils | Coil | 728 | 788 | - | - | |
| Stsc316g00006 | 889 | Gene3D | UVR domain | 217 | 268 | - | - | |
| Stsc316g00006 | 889 | Pfam | PCI domain | 373 | 508 | IPR000717 | - | |
| Stsc316g00006 | 889 | MobiDBLite | consensus disorder prediction | 874 | 889 | - | - | |
| Stsc316g00006 | 889 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 217 | 268 | - | - | |
| Stsc316g00006 | 889 | Coils | Coil | 561 | 602 | - | - | |
| Stsc316g00006 | 889 | Coils | Coil | 93 | 120 | - | - | |
| Stsc316g00006 | 889 | FunFam | Eukaryotic translation initiation factor 3 subunit A | 268 | 342 | - | - | |
| Stsc316g00006 | 889 | Coils | Coil | 622 | 649 | - | - | |
| Stsc316g00006 | 889 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 656 | 885 | IPR027512 | GO:0005852 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc316g00006 | Stsc-Chr316 | 27332 | 32596 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc316g00006 | 1 | 882 | Eukaryotic Initiation Factors Gene Family | AT4G11420 | 64.539 | 0.0 | 1172 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc316g00006 | K03254 | - | gmx:100803796 | 1284.63 |