Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc316g00005 ATGGCATTCTTTTCAGGAGCTCAGCGATTTCTTCGCCATTCTTCTTCAGTTTTGGCGTCCCACTTCACCTCCACTCGTCTCTCTTCAACAACTCTCACTTCCCCAAAACTCTTCGTCAGCGGTCTTTCAAGACTGACAACAGATGAAAAACTTACTGAAGCGTTTTCTCCTTTCGGGCAGCTGGTTGAAGCAAAGGTTATAACTGATAGAGCATCTGGACGGTCAAAGGGATTCGGTTTTGTAACTTATGTGACCATAGAAGATGCCGAAAAGGCGAGAGCCGGAATGAATGCTAAATTTATTGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAGCCACAGTCTCAGCCCTCTGATGCTGGCTTCACAGTTAACAAGACGGTTGGGTGGTGTGGTTGA 426 0.4671 MAFFSGAQRFLRHSSSVLASHFTSTRLSSTTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLVEAKVITDRASGRSKGFGFVTYVTIEDAEKARAGMNAKFIDGWVIFVDPAKPREPRPPQQPQSQPSDAGFTVNKTVGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc316g00005 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
Stsc316g00005 141 FunFam RNA binding protein 22 135 - -
Stsc316g00005 141 PANTHER NUCLEOLAR PROTEIN 8 24 140 - -
Stsc316g00005 141 SUPERFAMILY RNA-binding domain, RBD 30 130 IPR035979 GO:0003676
Stsc316g00005 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Stsc316g00005 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Stsc316g00005 141 Gene3D - 21 134 IPR012677 -
Stsc316g00005 141 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc316g00005 Stsc-Chr316 21750 23412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc316g00005 17 126 Eukaryotic Initiation Factors Gene Family AT3G16380 33.628 3.28e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc316g00005 - - gmx:100804327 190.274