Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31690g00002 ATGGCGGTGATCAAGAGAGAAAGAGAAACAAACAATGAAAAAGAGATCACCATAGATTTGGCAAGTAGCCTAATGTTGCTCTCGAGTGCTACAGAATTCAAGAATAGTGATTCGGAGAAATTCGAGTGTAAGACATGTGGACGAAAGTTCGCATCTTTTCAAGCACTTGGTGGGCACAGAACCAGTCACAAGAGACAAAAACTCGGTGATGAAGAACAACTCAAATCAGAAGAGGCCAAGAATCCATTGAGTCTAGGCAACAGAAAACCAAGGATGCATGAGTGTTCAATTTGTGGAATGGAATTCTCTTTGGGGCAGCAATTAGGTGGACACATGAGAAAGCACAGAGATAATAATAAAGGGTTTTCTGATTCTATAAACCATGCTGTTGTTGCCAAAGTACCAGTTTTGAAAAGATCGAATAGCAAGAGGGTTATGTTTATGGACTTGAACTTGACGCCATTGGAGAATGACCTCAAGTTCTTGTTTGGAAACAAGGCACCGCAAGTTGATCTCTCTTTGTTCTGA 528 0.4091 MAVIKRERETNNEKEITIDLASSLMLLSSATEFKNSDSEKFECKTCGRKFASFQALGGHRTSHKRQKLGDEEQLKSEEAKNPLSLGNRKPRMHECSICGMEFSLGQQLGGHMRKHRDNNKGFSDSINHAVVAKVPVLKRSNSKRVMFMDLNLTPLENDLKFLFGNKAPQVDLSLF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31690g00002 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Stsc31690g00002 175 MobiDBLite consensus disorder prediction 63 84 - -
Stsc31690g00002 175 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Stsc31690g00002 175 PANTHER ZINC FINGER PROTEIN ZAT5 17 158 - -
Stsc31690g00002 175 SMART c2h2final6 93 115 IPR013087 -
Stsc31690g00002 175 SMART c2h2final6 41 63 IPR013087 -
Stsc31690g00002 175 SUPERFAMILY beta-beta-alpha zinc fingers 40 115 IPR036236 -
Stsc31690g00002 175 Gene3D Classic Zinc Finger 38 115 - -
Stsc31690g00002 175 Pfam C2H2-type zinc finger 41 66 - -
Stsc31690g00002 175 Pfam C2H2-type zinc finger 93 117 - -
Stsc31690g00002 175 MobiDBLite consensus disorder prediction 57 86 - -
Stsc31690g00002 175 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Stsc31690g00002 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31690g00002 Stsc-Chr31690 5969 6651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31690g00002 4 172 C2H2 Transcription Factor Family AT3G53600 46.154 8.78e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc31690g00002 zf-C2H2_6 9.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31690g00002 - - gmx:100526874 206.068