Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31649g00001 ATGGGGCACCGTTGCTGCACCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTTCTCAGATATATCACAACTCATGGCCACAAAAGTTGGAGTTCTGTCCCTAAATTTGCAGGGTTGCAGAGATGCGGAAAGAGTTGTAGACTGAGATGGATAAATTATTTGAGGCCAGATCTGAAGAGGGGTTCCTTCACTGCAGAAGAAGAGCAGATCATAATTGACATTCATAGAATTCTCGGAAACAGGTGGGCTCAAATAGCAAAGCACCTACCTGGTAGAACAGACAACGAGGTGAAGAATTTCTGGAACTCTTGCATCAAAAAGAAGCTCATTTCTCAAGGCCTTGATCCCCAAACACACACTCTCCTCTCTTCTCATAGAAGAACATCATCATCATCAAACTTTCCTAATTACAACAATAATAATAATAATAATTCCTTTCTCATTATTACTTCTTCAAATATCCCAAACAATAATAATGCTCCCATTATTGAAACTACCCAAACTCTTTCTTCTTCATCATCATCACTACCTACTAATTATTATGATAAGGCTCAACCAAGTGTTGTTCAACCACCATTATCTCCCATATATGAACCACCAATACTAGACAATAATAATAATAATTCATGCATGAATAGCTTATTATGGGATTCAGGAACTGCTCATCATGATGCTGAAGATTGCAGAGTTGAGACATTATTGGAATATGGGCAAGGACTACAAAAACATGATGCTGATGAGGATGATGATGAGATCCGAGAAGCTAATAATAACATTATTGAGATGAATACCAATGCTTCTTTGGAAGGATCTAATAATGCTAATCATAATAATAACTTTGACTTTGGATTGTTGGAAAGTGTACTTTACTCTGAATTCATGTCTCATGATATCAACTATATGGATGAACTTGCGTGGAATTTTTAG 945 0.3704 MGHRCCTKQKIKRGLWSPEEDEKLLRYITTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRTSSSSNFPNYNNNNNNNSFLIITSSNIPNNNNAPIIETTQTLSSSSSSLPTNYYDKAQPSVVQPPLSPIYEPPILDNNNNNSCMNSLLWDSGTAHHDAEDCRVETLLEYGQGLQKHDADEDDDEIREANNNIIEMNTNASLEGSNNANHNNNFDFGLLESVLYSEFMSHDINYMDELAWNF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31649g00001 314 FunFam MYB transcription factor 5 65 - -
Stsc31649g00001 314 CDD SANT 68 108 IPR001005 -
Stsc31649g00001 314 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Stsc31649g00001 314 SMART sant 12 62 IPR001005 -
Stsc31649g00001 314 SMART sant 65 113 IPR001005 -
Stsc31649g00001 314 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc31649g00001 314 Coils Coil 251 271 - -
Stsc31649g00001 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Stsc31649g00001 314 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc31649g00001 314 PANTHER MYB DOMAIN PROTEIN 55 1 284 - -
Stsc31649g00001 314 Gene3D - 68 140 - -
Stsc31649g00001 314 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc31649g00001 314 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Stsc31649g00001 314 CDD SANT 16 60 IPR001005 -
Stsc31649g00001 314 Gene3D - 13 65 - -
Stsc31649g00001 314 FunFam Transcription factor MYB86 67 144 - -
Stsc31649g00001 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31649g00001 Stsc-Chr31649 10569 13525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31649g00001 1 314 MYB Transcription Factor Family AT3G12720 47.892 2.33e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc31649g00001 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31649g00001 K09422 - gmx:100811532 319.316