Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31624g00002 ATGGAGGTTCCAGAGAAGGAAGGGAAGATTGAAAGCCATACAACATCTGCGGCAGCCTTTGTTGAAGGCGGGATTCAAGATGCCTGTCATGATGCTTGCAGTATATGCCTTGAGGAATTTTGCGAAAGTGATCCTGCAGCGGTGACTAATTGCAAGCACGAGTTCCACCTACACTGCATTCTTGAATGGTGTCAAAGAAGCTCCCAATGTCCCATGTGTTGGCAATCTGTTAGCTTGAAGGATGCTACCAGTCAAGAATTGCTCGAGGCGGTAGAGCAGGAGAGGAGCATAAGGGTTACCCCATCAAGAAATGTTGATATTTTTCGTCATCCAGCCCTTGATGATCCTGAATTGCAGCAGTTTGAAGAGCGAATAATTCAACATATAGCTGCTGCGGCAGCAGTGAGGAGAGCACGACACCTTGGTCACAGGGAAGGAACGAGTACTAGGTCATCTGCTCATGTCCATCCACAGTTCTTACTATTCTCGACGCAGCCGAGTGCACATCCATCTAGTCCTGAATCAGCTGCCGGAGATGGAAATGAACTGGCTGAAATCCCTGTAGGAAGTCCATCTACACCACTTACATCCAATGGAGACGAACCATCAATGTCTCAGCTGATTGCACATATTCAAAATCGGAGCTCTTCTTTAGCTCACAGGTCTACTGTCTCAGCTACAGACCGCGAAGAGATTTACCCTAATGAAAGAAGTTCTACCACTCATTCTTCGGCTATGAACGAAGATGTAGCCGGACCATCCGATCTCCAGTCATTTTCCGATTCTTTGCGGTCCAAATTTAATGCAATGTCCCTGAGATACAAAGAATCGCTTTCGAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGAAATTCTTCTGTTTCTGAACTCGGTTCAGAAGTCAAGAGAGAGTTGAATGCTGGAATTGCAAGTGTATCTCGATTGATGGAGCGTCTCGAAACTAGAGAGAATAATAGAGTTGAGGACTCGTCTTTGTCGAATCATTTGACCAATAACTCCATTGCTGAGACAAGCAACCCGCGCAATGTGGAAGCTCTCAGAAGGAACTCTTCCCGCAGCAACAATTCTCCAGCCACTTTTTCTGCTGGCTCAGATTCAAATTAA 1131 0.4642 MEVPEKEGKIESHTTSAAAFVEGGIQDACHDACSICLEEFCESDPAAVTNCKHEFHLHCILEWCQRSSQCPMCWQSVSLKDATSQELLEAVEQERSIRVTPSRNVDIFRHPALDDPELQQFEERIIQHIAAAAAVRRARHLGHREGTSTRSSAHVHPQFLLFSTQPSAHPSSPESAAGDGNELAEIPVGSPSTPLTSNGDEPSMSQLIAHIQNRSSSLAHRSTVSATDREEIYPNERSSTTHSSAMNEDVAGPSDLQSFSDSLRSKFNAMSLRYKESLSKGTRGWKERLFSRNSSVSELGSEVKRELNAGIASVSRLMERLETRENNRVEDSSLSNHLTNNSIAETSNPRNVEALRRNSSRSNNSPATFSAGSDSN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31624g00002 376 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 17 81 - -
Stsc31624g00002 376 MobiDBLite consensus disorder prediction 325 376 - -
Stsc31624g00002 376 Coils Coil 304 324 - -
Stsc31624g00002 376 MobiDBLite consensus disorder prediction 332 376 - -
Stsc31624g00002 376 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Stsc31624g00002 376 MobiDBLite consensus disorder prediction 163 202 - -
Stsc31624g00002 376 SUPERFAMILY RING/U-box 29 80 - -
Stsc31624g00002 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 83 IPR013083 -
Stsc31624g00002 376 MobiDBLite consensus disorder prediction 214 257 - -
Stsc31624g00002 376 Pfam Ring finger domain 32 73 IPR001841 -
Stsc31624g00002 376 SMART ring_2 33 73 IPR001841 -
Stsc31624g00002 376 MobiDBLite consensus disorder prediction 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31624g00002 Stsc-Chr31624 2965 6510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31624g00002 31 81 C3H Transcription Factor Family AT4G00335 47.059 1.50e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31624g00002 K19043 - gmx:100803582 499.975