Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31618g00002 ATGTTGGGGGTGAAAGCTCTAATAAAAGCACTTCACTTCAGCAGAGAACAGTGTTCAGTGATGCAAATTCTGTGCTTCTTGAATCTTCTGATAGGTTGGTATCTCTCAAACTCCAACCTTGTTAATGCTCAGTTAAAAGACCAGGCTATATTACTTGCCATCAACCAAGAGCTTGGTGTCTCTGGCTGGGATTCCAACAACTCAAACTACTGTAATTGGCAAGGAATAAGCTGTGGTAATCACTCAATGGTGGAGAAGCTTGATCTCGCTCACCGGAACCTTCGAGGTAATGTTACTCTGATGTCTGAGCTCAAAGCATTGAAGTGGCTTGACTTGTCAAATAATAACTTTGATGGATTGATTCCTCCTGATATTGGAAAGTTATCTGATCTTGAAGTTCTAGATTTGTCTTCGAATAAGTTTACAGGCTCGATTCCGCCGCAATTGGGTGATCTCAGAAGCCTCAGATCATTGAATCTTTCCAGTAATGTGCTTGTTGGAGAGATACCAATGGAGCTTCATGGCTTAGAGAATTTGCATGATCTTCAAATTTCTAGTAATCATTTGAGTGGTTTAATACCTTCTTGGTTGGGCAATTTGACCAACCTGAGGGTTTTTTCTGCTTATGAGAATCGTTTAGGTGGCAAGATTCCGGATAATTTAGGATTGATTCCTGATCTTCAGATACTTAACCTGCACTCTAATCAACTTGAAGGCCCTATACCGGCAAGCATTTTCGCCCCGGGGAAGCTACAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGATATTCCTCAGGAAATTGGGAATTGCCATGCTCTTTCCAGTGTTCGAATCGGAAACAACCATCTAGTAGGTTCTATTCCTAAGACAGTTGGAAATCTTAGTAGCCTAACCTACTTTGAGGCCGACAATAATAATCTTTCCGGTGAAGTAGTGTCTGAATTTGCTCAGTGTTTGAATCTCACTCTCTTGAATTTAGCTTCAAATGGATTTATGGGAACGATTCCGCCGGAATTTGGAAAACTAATGAACCTTCAGGAGTTGATTCTTTCTGGAAATAGCCTGTTTGGAGATATCCCGAGGTCGATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATTCCAAGTGAAATCTGCAATATTTCTAGGCTTCAGTACTTGCTCTTGGGTCAGAATTCCATGAGAGGAGAGATACCTCATGAAATTGGAAATTGCGCGAAACTTCTTGAATTACAATTGGGAAACAACTATTTGACTGGAACTATCCCTCCTGAAGTTGGTCACATTAGAAACTTACAGATAGCACTAAATCTGAGCTTCAATCATCTTCATGGACCACTGCCCCCTGAGTTAGGAAGACTAGACAAACTAGTTTCCCTGGATGTCTCAAACAATCGCCTCTCGGGTAATATACCACCCGAGCTTAAGGGAATGCTGAGCTTGATAGAGGTCAACTTCTCCAACAATCTTTTTGGAGGTCCTGTACCAGAATTCGTACCATTTCAGAAGAGTCCTATTTCAAGCTTCGTCGGTAATAAAGGGCTTTGCGGAGAGCCACTCAACTCTTCATGTGGAGATCTTTATGATGATCACAAGGCCTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTAGCAGTTTTTATGTCGGTATCTATAGTTGTCTTGCTTTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGCCGGGATTATAGACGATGGAACAACCGAAAAACCAACTATAATTGCTGGGAGCATTTTTGTTGAACATCTCAAACAAGCAGTAGACCTTGATGCAGTTGTTAAAGCGACTCTGAAAGACTCTAATAAGCTCAGCAGCGGAACTTTCAGCACTGTTTACAAGGCCATCATGCCTTCTGGAGTGATCTTATCCGTAAGGAGACTGAAGTCCGTCGACAAGACAATAATGAACCACCAGAACAAGATGATTAGAGAACTCGAAAGGCTGAGCAAAGTCTGTCACGATAATCTAGTTCGACCGGTTGGCTATGTTATATATGAAGATGTTGCTCTTCTCTTGCATAACTATTTTCCAAATGGTACACTTGCTCAGCTTCTTCATGAATCTTCAAGGCAACCAGAATATCAGCCTGACTGGCCTTCTAGGCTATCCATTGCCATTGGAGTTGCGGAAGGTTTGGCTTTTCTTCATCATGTAGCAATTATCCATCTTGACATTTCTTCAGGCAATGTTCTTCTAGATGCAAATTTCAAGCCATTGGTTGGGGAGATCGAGATTTCTAAACTCCTTGATCCAACCAAGGGCACTGCCAGTATTAGTGCAGTTGCTGGTTCCTTCGGTTACATTCCACCAGAATATGCTTATACAATGCAAGTTACAGCACCGGGAAATGTTTATAGCTATGGTGTTGTTCTGTTGGAAATCCTTACTACTCGACTACCGGTGGATGAGGATTTCGGTGAAGGCATAGATTTGGTGAAGTGGGTTCAAAGTGCTCCGGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTCAGCACTGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTTGCGTTGCTCTGCACGGATACCACACCGGCAAAACGACCAAAAATGAAGAATGTGGTTGAAATGCTCCGAGAGATAAACCAAAACTGA 2724 0.4207 MLGVKALIKALHFSREQCSVMQILCFLNLLIGWYLSNSNLVNAQLKDQAILLAINQELGVSGWDSNNSNYCNWQGISCGNHSMVEKLDLAHRNLRGNVTLMSELKALKWLDLSNNNFDGLIPPDIGKLSDLEVLDLSSNKFTGSIPPQLGDLRSLRSLNLSSNVLVGEIPMELHGLENLHDLQISSNHLSGLIPSWLGNLTNLRVFSAYENRLGGKIPDNLGLIPDLQILNLHSNQLEGPIPASIFAPGKLQVLVLTQNNFSGDIPQEIGNCHALSSVRIGNNHLVGSIPKTVGNLSSLTYFEADNNNLSGEVVSEFAQCLNLTLLNLASNGFMGTIPPEFGKLMNLQELILSGNSLFGDIPRSILSCKSLNKLDISNNRFNGTIPSEICNISRLQYLLLGQNSMRGEIPHEIGNCAKLLELQLGNNYLTGTIPPEVGHIRNLQIALNLSFNHLHGPLPPELGRLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLFGGPVPEFVPFQKSPISSFVGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVSIVVLLFMIRERQEKVAKDAAGIIDDGTTEKPTIIAGSIFVEHLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVILSVRRLKSVDKTIMNHQNKMIRELERLSKVCHDNLVRPVGYVIYEDVALLLHNYFPNGTLAQLLHESSRQPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGIDLVKWVQSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDTTPAKRPKMKNVVEMLREINQN 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31618g00002 907 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 705 907 - -
Stsc31618g00002 907 Gene3D Ribonuclease Inhibitor 275 543 IPR032675 -
Stsc31618g00002 907 Pfam Protein tyrosine and serine/threonine kinase 629 901 IPR001245 GO:0004672|GO:0006468
Stsc31618g00002 907 SUPERFAMILY L domain-like 61 315 - -
Stsc31618g00002 907 ProSiteProfiles Protein kinase domain profile. 626 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31618g00002 907 Pfam Leucine rich repeat N-terminal domain 53 78 IPR013210 -
Stsc31618g00002 907 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 596 704 - -
Stsc31618g00002 907 Gene3D Phosphorylase Kinase; domain 1 595 704 - -
Stsc31618g00002 907 SUPERFAMILY L domain-like 217 531 - -
Stsc31618g00002 907 FunFam Nuclear pore complex protein NUP107 41 195 - -
Stsc31618g00002 907 Gene3D Ribonuclease Inhibitor 44 196 IPR032675 -
Stsc31618g00002 907 SMART LRR_typ_2 176 199 IPR003591 -
Stsc31618g00002 907 SMART LRR_typ_2 465 488 IPR003591 -
Stsc31618g00002 907 SMART LRR_typ_2 224 248 IPR003591 -
Stsc31618g00002 907 SMART LRR_typ_2 104 127 IPR003591 -
Stsc31618g00002 907 SMART LRR_typ_2 128 152 IPR003591 -
Stsc31618g00002 907 SMART LRR_typ_2 344 368 IPR003591 -
Stsc31618g00002 907 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 245 538 - -
Stsc31618g00002 907 PRINTS Leucine-rich repeat signature 128 141 - -
Stsc31618g00002 907 PRINTS Leucine-rich repeat signature 107 120 - -
Stsc31618g00002 907 ProSitePatterns Tyrosine protein kinases specific active-site signature. 749 761 IPR008266 GO:0004672|GO:0006468
Stsc31618g00002 907 Gene3D Transferase(Phosphotransferase) domain 1 705 907 - -
Stsc31618g00002 907 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 42 903 - -
Stsc31618g00002 907 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Stsc31618g00002 907 Gene3D Ribonuclease Inhibitor 208 274 IPR032675 -
Stsc31618g00002 907 Pfam Leucine Rich Repeat 346 368 IPR001611 GO:0005515
Stsc31618g00002 907 SUPERFAMILY Protein kinase-like (PK-like) 626 904 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31618g00002 Stsc-Chr31618 2975 6407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31618g00002 21 906 Receptor kinase-like Gene Family AT2G41820 70.946 0.0 1288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc31618g00002 PK_Tyr_Ser-Thr 8.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31618g00002 - - adu:107492611 1729.92