Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31601g00002 ATGTTAACGAGGTCCCTTAGAGGAGTGGGATTCCGCTCCCAGACCATTAGAAACGGATCAACTTGTATTTTTTGCTTCTTCGTAATTAAAGGGCAGGATTGCATTAACAATCAAATTTCACGTACTATCATAGTTGATCAATCTGGGAGGGACTCAAAATTCAAAACTGTTCAATCCGCAATTGATTCAATACCTGAAAACAATAATAAATGGGTGAAAATTCACATCAATGCTGGCACCTACGAAGAGAAGGTTAATATTCCTTGTGAGAAGCCATGCATTTTTCTGGAAGGAGAAGGCATAGATGTTACCACAATTACATACAATGATCACCAACAAATGGATGAGAGTGCCACATTCTCTTCCTACCCAGACAATGTGGTTGCAAGTAGCATTACTTTTAAGAACTCGTTCGATGTGGGGAGAGTGATGAGTTTGGAAGAAATAAAGAATGGAAATATACAAGTGCCAGCATTGTCAGCAAGAATATATGGAGATAAATCTGGGTTTTATAATTGCAAATTTGTCGGATATCAGGATACTTTATGGGATGTCCAAGGTCGTCATTATTTCAAAAATTGCATTATCGAAGGAGCCGTAGATTTTATATTTGGCAATGGACAGTCTTATTTCGAGGATTGTGTGATGAATACGACGTCGTCAGGGTTCATAACAGCCCAAGGGCGGCAATCGGATGAAGAGCCGAGTGGTTTTGTGTTCAAAGGTGGCTACGTGGTTGGCTCCAACGGTGCTTCCTCTTTGTTGGGACGAGCCTATGGTCCCTATTCTCGAGTTATCTTCATTCAAACTAATTTTGATTCTGTGGTTAGCCCTACGGGTTGGGATTCCTGGCATTTTGCAACACATGAGTAA 873 0.4066 MLTRSLRGVGFRSQTIRNGSTCIFCFFVIKGQDCINNQISRTIIVDQSGRDSKFKTVQSAIDSIPENNNKWVKIHINAGTYEEKVNIPCEKPCIFLEGEGIDVTTITYNDHQQMDESATFSSYPDNVVASSITFKNSFDVGRVMSLEEIKNGNIQVPALSARIYGDKSGFYNCKFVGYQDTLWDVQGRHYFKNCIIEGAVDFIFGNGQSYFEDCVMNTTSSGFITAQGRQSDEEPSGFVFKGGYVVGSNGASSLLGRAYGPYSRVIFIQTNFDSVVSPTGWDSWHFATHE 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31601g00002 290 ProSitePatterns Pectinesterase signature 2. 196 205 IPR033131 -
Stsc31601g00002 290 Gene3D - 36 290 IPR012334 -
Stsc31601g00002 290 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 36 289 - -
Stsc31601g00002 290 Pfam Pectinesterase 44 285 IPR000070 GO:0030599|GO:0042545
Stsc31601g00002 290 SUPERFAMILY Pectin lyase-like 39 285 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31601g00002 Stsc-Chr31601 10573 13628 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31601g00002 33 290 Carbohydrate Esterase AT2G19150 45.693 3.90e-72 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31601g00002 - - ahf:112735617 452.21