LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc31601g00001	ATGGATGTAAGAACAGTTTTCTCCGATGCCAGCACCAGCAGCGGCGTCTTCTACGCCACCACCATGCCCTACAACAACCCCCATCATCATCACTACTATCCAACTTCCTCCTCAAACCCTCATCCACCTGATGATGATGATGATGATATCGCACCTCTCAGGCTTCTCTCCGACAGCCTCGCCTCCCTCTTCCACTCCGATTTCGACTTCTACGCGGACGCCAGGATAGTCCTGGCTGACGGGAGGGAGCTGGCGGTGCACCGCTGCATCCTGGCGGCGAGAAGCAGCTTCTTCAGAAGCTTTTTCGCGAAGGACGGGGAGGAGAGGAAGAAGGTGGCGATGAAGGAAGTGGCGAAGGAGTACGAGGTGGGAGGGGAGGCGGTTGGTGCGGTGGTTGGGTACCTGTACAGCGGGAGAGTGACGGCGATGGAGATTCCGAGCGGGATGTGCGTGTGCGTGGACGATGAATGCCCGCACTTTGGGTGTAGACCTGCTGTTGATTTCATGGTTCAGGTTCTCTACGCTTCCTTCGTCTTCCAGATTCACGACTTGGTTGCTCTCTATCAGAGACATCTACTAGAGATTCTAGACAAGGTAGCAATTGATGACATTCTTGTGGTCCTTTCTGTTGCAAATATTTGTGGCAAGATGTGTGAGAGGCTTCTTGCAAGGTGCATTGATCTCGTTATCAAGTCGGACGCAGACAGCACCACCGTGGAGAAGACGCTGCCGGAACCGGTGGCGAAACTCATTGCTGACAAGCGCGTAGAACTGGGCTTCCAACGGCCCGAACGCCTCCGTTTCCCGGATAAACATGTCAAGAGGATACACAGGGCACTGGATTCCGATGATGTGGAATTGGTCAGGATGCTGTTGAAAGAAGGTCACACGAATCTTGACGAGGCATGTGCTCTTCACTACGCCGTGGCATACTGCGACGCCAAGACTACAACAGAGCTTCTTGATCTTGGTCTTGCAGATGTGAACCACAAGAACCTTAGGGGTTACAGCGTCCTTCATGTGGCCGCTATGAGGAAAGAGCCCAAAATCATAGTTTCCCTGTTAACAAAGGGTGCTCATCCTTCCGATCTTACCTTGGACGGAAGAAAAGCCCTTCAGATTTCGAAGCGGCTGACGAAAGCCGTGGACTATTACAAGTCCACGGAGGAAGGCAAGGTTTCGTCCAAGGACCGTTTGTGCATTGAGATATTGGAGCAGGCTGAGAGAAGGGATCCTCTCCTCGGAGAGGCATCGCTTTCACTAGCCATGGCTGGAGATGATTTGCGTATGAAGTTGTTGTACCTGGAAAACAGAGTTGGATTGGCGAAAGTGCTGTTTCCAATGGAAGCAAAGGTTGTGATGGATATAGCTCAAGTTGATGGAACATCTGAATTTCAACCACAAGACATCTACCCTCAAAACATGCGTGGTAGCACCGTGGACTTGAACGAGACACCTTTCAAAATGAAAGAAGAGCACTTAGCCAGGATGAAAGCACTCTCTAGAACTGTGGAACTAGGGAAACGATTCTTCCCTCGTTGCTCGGCGGTGCTGAACAAGATAATGGATGCAGATGATCTCACTCAGCTGGCTTGCATGAACAATGACAGCCCCGAAGAACGGCTAGCAAAGCGAAGAAGGTACATGGAGCTCCAAGAGATTCTAAGTAAGGCCTTCAATGAGGACAAAGAGGAGTTTGATAAGTCTGCCATTTCTTCATCTTCTTCTTCCACTTCTGTGGGAGTTATCAGGCCTAATGGCAAACTACCCATCAGGAAATAG	1782	0.5079	MDVRTVFSDASTSSGVFYATTMPYNNPHHHHYYPTSSSNPHPPDDDDDDIAPLRLLSDSLASLFHSDFDFYADARIVLADGRELAVHRCILAARSSFFRSFFAKDGEERKKVAMKEVAKEYEVGGEAVGAVVGYLYSGRVTAMEIPSGMCVCVDDECPHFGCRPAVDFMVQVLYASFVFQIHDLVALYQRHLLEILDKVAIDDILVVLSVANICGKMCERLLARCIDLVIKSDADSTTVEKTLPEPVAKLIADKRVELGFQRPERLRFPDKHVKRIHRALDSDDVELVRMLLKEGHTNLDEACALHYAVAYCDAKTTTELLDLGLADVNHKNLRGYSVLHVAAMRKEPKIIVSLLTKGAHPSDLTLDGRKALQISKRLTKAVDYYKSTEEGKVSSKDRLCIEILEQAERRDPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKVLFPMEAKVVMDIAQVDGTSEFQPQDIYPQNMRGSTVDLNETPFKMKEEHLARMKALSRTVELGKRFFPRCSAVLNKIMDADDLTQLACMNNDSPEERLAKRRRYMELQEILSKAFNEDKEEFDKSAISSSSSSTSVGVIRPNGKLPIRK	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc31601g00001	593	Gene3D	-	247	463	IPR036770	-
	Stsc31601g00001	593	SMART	ANK_2a	300	330	IPR002110	GO:0005515
	Stsc31601g00001	593	SMART	ANK_2a	271	299	IPR002110	GO:0005515
	Stsc31601g00001	593	SMART	ANK_2a	334	363	IPR002110	GO:0005515
	Stsc31601g00001	593	MobiDBLite	consensus disorder prediction	29	50	-	-
	Stsc31601g00001	593	SUPERFAMILY	Ankyrin repeat	275	376	IPR036770	-
	Stsc31601g00001	593	Pfam	NPR1/NIM1 like defence protein C terminal	376	578	IPR021094	-
	Stsc31601g00001	593	CDD	BTB_POZ_NPR_plant	54	196	-	-
	Stsc31601g00001	593	Gene3D	Potassium Channel Kv1.1; Chain A	51	230	IPR011333	-
	Stsc31601g00001	593	PANTHER	REGULATORY PROTEIN NPR3	41	580	IPR044292	GO:0009862\|GO:2000022\|GO:2000031
	Stsc31601g00001	593	FunFam	BTB/POZ domain and ankyrin repeat-containing protein NPR1	245	398	-	-
	Stsc31601g00001	593	ProSiteProfiles	BTB domain profile.	72	144	IPR000210	GO:0005515
	Stsc31601g00001	593	SUPERFAMILY	POZ domain	59	193	IPR011333	-
	Stsc31601g00001	593	Pfam	BTB/POZ domain	70	192	IPR000210	GO:0005515
	Stsc31601g00001	593	MobiDBLite	consensus disorder prediction	566	593	-	-
	Stsc31601g00001	593	SMART	BTB_4	72	196	IPR000210	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc31601g00001	Stsc-Chr31601	113	4339	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TRAF	Stsc31601g00001		NPR1_like_C	6.1e-92	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc31601g00001	K14508		-	gmx:100800032	771.155