Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc315g00006 ATGTATCTTTCAAAGGGTTGCAAGCATCAAGTTCTTTTCGTCTTGTGGTTCTGCTGTTACGTTCTATATGTTACGGCACAGAACAATGTCACTGACCCTGTTGAAGTTGAAGCATTGAAGGTCATAAAGCAAAGATTGCATGACCCTAATGGAAATTTGAGCGATTGGGGACGTAATGATCCATGTACATCGAAGTGGACAGGAGTTTTGTGCTACAACAAAACATTGGATGATGGATATCTACATGTTCAAGAACTGCAATTACTAAATTTGAAACTGTCAGGAAATTTGGCACCCGAGCTCGGCAACTTAACACGTTTACTAAGATTGAACTTCATGTGGAACAACATAACTGGGAGTATTCCGAAGGAAATCGGCAACATCAAAACTTTGCTACTCTTGCTTCTGAATGGAAACCAATTAACTGGTCCACTACCAGATGAGCTCGGCTATCTTCCGAATTTGGATAGGATACAAATTGATCAGAACAATATATCAGGACCTGTACCTAAATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAATAATTCACTTAGTGGACAAATCCCGCCGGAACTTTCCCGGTTGCCAAATCTTGTTCATCTTCTTCTTGACAACAACAAATTAACAGGATATCTTCCCAGTGACCTCTACAAGTTGCCGAACTTACTTATAATTCAACTTGATAACAATAACTTCGAGGGAAATACTATTCCAAGTTCTTATGGCAAAATGTCAAAACTGCTGAAAATGAGTCTTAGGAATTGCAACTTGACAGGACCAGTTCCTGATTTAAGCAGGATACCACACCTTCTTTATCTAGACCTCAGTTCCAATCAGTTGAATGGATCAATTCCACGCAACACGCTTTCCAACAACATCACAACCATTGATTTATCGAACAACAAGCTTACCGGAACTATTCCACCCTACTTTTCTAGTCTTCCTGTTCTTCAGAGATTGTCACTTGAAAACAATTCATTGAATGGCAGTGTTTCTTCCACCATTTGGCAGAACAAGACTTTGAACGGAAAAGAATTTATCTTGGAGTTGCAAAACAATGACCTTACAAGCATATCAGGCACTACTGATATTCCTCCAAATGTCACACTCTCGCTTGATGGGAATCCTTTATGCTCAAATAATAAGTCCCTGGTTCAGTTCTGTGGATCTGAGACTGCTGACAATAACACAAATGGCATTGTTTCAACGAATTCCAGTTCATGCCCTGCTCAAGCGTGCCCTCCGCCGTTTGAGTATTCCTTGGATTGTTTCTGTGCAGCACCATTGCTCGTTGGTTATCGGCTGAAAAGTCCTGGATTTTCGGATTTTCGACCATATGTGCTTACCTTTGAGGAATACCTGAGCAAGGGTCTTAGTTTAGAGATGGATCAGCTACAATTTGATTTTTATTGGCAAGCTGGACCTCGATTGAGAATGGACTTGAAGCTTTTTCCGGTTTATGTTGACAACAGAAGCTCTCATATTTTCAATACATCCGAGCTCCTACGGCTCATGAACATGTTCACCGGATGGAACATTCCAGACAATGATTTGTTTGGTCCTTATGAGTTAATTGGCTTCGATCTGCTTGATCCTTACAAGAACGTGGTCATCCCCAGCTCTTCAAAATCAAAGATAAGCACAGGTGCTTTGGCTGGTATAATCTTAGGATCAATTGCCTGCGCGGTGACGTTATCTGCAATCGTTACACTCCTTATATTAAGAGTAAAGGCCTTCACTTTTGGAGAACTGTCTGCTGCTACAAACAATTTTAGCAGCTCTTCTCAAGTTGGACAAGGGGGCTACGGCAAGGTTTACAAAGGCATTCTTTCTGATGGCACCGTTGTTGCCATTAAACGTGCGCAGGAGGGGTCGCTGCAAGGTGAGAGAGAGTTCCTCACAGAAATATCATTACTATCGAGGTTACATCATCGCAACCTTGTGTCTCTCATTGGATACTGTGATGAAGAGGGTGAACAGATGCTGGTTTATGAATTCATGCCAAATGGCACACTAAGGGAACACATTTCTGTTACGGCAAAAGAGCCTCTGAGTTTCGCCATGAGGTTGAAGATCGCGCTAGGATCGGCAAAGGGTCTTATGTACTTACACAATGAAGCTGATCCACCAATATTTCACAGAGATGTAAAAGCCAGCAACATACTATTGGACTCAAAGTTCACAGCGAAAGTGGCTGATTTCGGACTTTCACGGCTCGCTCCGGTTCCTGATCTTGAAGGAGTCGTGCCTGGACATGTATCCACAGTGGTAAAGGGCACCCCGGGTTATCTTGATCCAGAGTACTTCCTAACTCACAAGTTGACCGACAAAAGCGATGTTTATAGTCTCGGGGTTGTGTTTCTCGAACTTTTGACTGGGATGCAACCAATCTCACATGGCAAGAATATTGTTAGAGAGGTTAATGTTGCATATCAATCCGGCATTATATTTTCGGTTATTGATGACCGCATGGGGTCCTATCCATCTGAGCATGTAGAGAAATTCTTGACCCTGGCCCTCAAGTGTTGTGAAGACGAGCCAGAAGCACGGCCTAAAATGGCAGAGGTGGTTAGGGAACTGGAAAACATATGGTCCATGATGCCGGAATCAGATACCCGGAGAGCCGAATCGATAACCAGCGATTCAGGAAAGTTAAGTACAAGTACACCATCTTCATCTTCTGCTATAAAGACTCCATTTGTATCAGGAGATGTCTCAGGTAGTGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2781 0.4254 MYLSKGCKHQVLFVLWFCCYVLYVTAQNNVTDPVEVEALKVIKQRLHDPNGNLSDWGRNDPCTSKWTGVLCYNKTLDDGYLHVQELQLLNLKLSGNLAPELGNLTRLLRLNFMWNNITGSIPKEIGNIKTLLLLLLNGNQLTGPLPDELGYLPNLDRIQIDQNNISGPVPKSFANLNKTKHFHMNNNSLSGQIPPELSRLPNLVHLLLDNNKLTGYLPSDLYKLPNLLIIQLDNNNFEGNTIPSSYGKMSKLLKMSLRNCNLTGPVPDLSRIPHLLYLDLSSNQLNGSIPRNTLSNNITTIDLSNNKLTGTIPPYFSSLPVLQRLSLENNSLNGSVSSTIWQNKTLNGKEFILELQNNDLTSISGTTDIPPNVTLSLDGNPLCSNNKSLVQFCGSETADNNTNGIVSTNSSSCPAQACPPPFEYSLDCFCAAPLLVGYRLKSPGFSDFRPYVLTFEEYLSKGLSLEMDQLQFDFYWQAGPRLRMDLKLFPVYVDNRSSHIFNTSELLRLMNMFTGWNIPDNDLFGPYELIGFDLLDPYKNVVIPSSSKSKISTGALAGIILGSIACAVTLSAIVTLLILRVKAFTFGELSAATNNFSSSSQVGQGGYGKVYKGILSDGTVVAIKRAQEGSLQGEREFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLREHISVTAKEPLSFAMRLKIALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDLEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGIIFSVIDDRMGSYPSEHVEKFLTLALKCCEDEPEARPKMAEVVRELENIWSMMPESDTRRAESITSDSGKLSTSTPSSSSAIKTPFVSGDVSGSDLVSGVIPSIKPR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc315g00006 926 SUPERFAMILY L domain-like 46 395 - -
Stsc315g00006 926 SMART serkin_6 596 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc315g00006 926 Gene3D Transferase(Phosphotransferase) domain 1 672 889 - -
Stsc315g00006 926 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Stsc315g00006 926 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Stsc315g00006 926 SUPERFAMILY Protein kinase-like (PK-like) 582 889 IPR011009 -
Stsc315g00006 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Stsc315g00006 926 FunFam Leucine-rich repeat protein kinase family protein 568 671 - -
Stsc315g00006 926 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Stsc315g00006 926 ProSiteProfiles Protein kinase domain profile. 596 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc315g00006 926 MobiDBLite consensus disorder prediction 884 906 - -
Stsc315g00006 926 Pfam Protein kinase domain 597 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc315g00006 926 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Stsc315g00006 926 CDD STKc_IRAK 602 868 - -
Stsc315g00006 926 MobiDBLite consensus disorder prediction 875 926 - -
Stsc315g00006 926 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 672 882 - -
Stsc315g00006 926 Gene3D Phosphorylase Kinase; domain 1 568 671 - -
Stsc315g00006 926 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Stsc315g00006 926 SMART LRR_typ_2 200 224 IPR003591 -
Stsc315g00006 926 SMART LRR_typ_2 152 175 IPR003591 -
Stsc315g00006 926 SMART LRR_typ_2 319 343 IPR003591 -
Stsc315g00006 926 SMART LRR_typ_2 272 296 IPR003591 -
Stsc315g00006 926 Gene3D Ribonuclease Inhibitor 293 417 IPR032675 -
Stsc315g00006 926 Gene3D Ribonuclease Inhibitor 187 292 IPR032675 -
Stsc315g00006 926 PANTHER RECEPTOR-LIKE PROTEIN 55 42 869 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc315g00006 Stsc-Chr315 44474 50853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc315g00006 18 878 Receptor kinase-like Gene Family AT5G01950 58.241 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc315g00006 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc315g00006 - - gmx:100799888 1420.99