Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc315g00004 ATGGGGAGAAGACCAGCGAGATGTTACAGGCAAATCAAGAACAAGCCATATCCAAAATCGCGATTCTGCAGGGGAGTGCCTGACCCGAAGATCAGAATCTATGACGTAGGGATGAAGAAGAAGGGTGTGGATGAGTTCCCGTTCTGCGTGCACCTTGTTTCATGGGAGAAGGAGAATGTTTCGAGTGAGGCACTTGAAGCTGCTCGCATTGCTTGCAACAAGTACATGTCCAAATTCGCAGGCAAAGACGCTTTCCATTTGCGTGTTAGGGTTCATCCTTTCCATGTTCTTCGCATCAACAAGATGCTCTCCTGCGCCGGCGCCGACAGGCTCCAGACCGGCATGAGGGGCGCCTTTGGCAAGCCCCAAGGGACTTGCGCTAGGGTCAACATTGGCCAGGTGCTTCTCTCGGTTCGCACCAAGGATAACAATGGTCATCATGCTCAGGAGGCTCTGCGACGCGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCATTGTCAGCAGGAAGTGGGGATTTACAAAGTTCAACCGAAAGGAGTATTTGAAGTTAAAGTCAGAGAACAGAATTATGCCTGATGGTGTCAATGCCAAGGTTCTTGGGTGCCATGGACCTTTGGCAAATCGTAAACCTGGAAGAGCTTTCTTGTCAGCTACTGCAAGTGCTTAA 669 0.5082 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRTKDNNGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRKEYLKLKSENRIMPDGVNAKVLGCHGPLANRKPGRAFLSATASA 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc315g00004 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Stsc315g00004 222 FunFam 60S ribosomal protein L10 1 206 - -
Stsc315g00004 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc315g00004 Stsc-Chr315 29538 31744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc315g00004 1 221 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.783 6.15e-146 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc315g00004 K02866 - gmx:100779884 437.187