Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31583g00003 ATGGACAAGGGACCACCACCTGCCCTCTTTGTTAATGATGGTTCATTCATGGAGAAGTTCAAGCAAATGCAGCAAGAGCAGGAGAAGGAGAAGAATAACAAACTATCTGAGCCTAAACCAATTAAAGTTGTTTCAGGATCTTTGGCTCCTAAACCCTTCATTAGTAGGGTTAATGATACACGTAAAACTTCTCAGGCAAGTTCCAGTGGCAAACTTGCTTTCAGTCTAAAACAAAAGTCAAAGCTGGTTCCGCCGCCTGTTAAGTTAGCTGATGATGAAGAAGAAGAAGAAGAAGAAACAGATGCTGGGGATTTTTCAAATTCTGTACAGGCAAAACGGCAAAAATTTGATCAGGAGGATGGCACTACACAGCCATCGAGACAATTTGATGTTGCACCTCCAACCCCAAGTGATCCAATGGTGAAGAAAGTTGCTGACAAATTAGCAAGTTTTGTGGCTAAAAACGGAAGACAATTCGAGGATGTTACTCGCCAAAAGAATCCTGGGGATACACCTTTTAAATTTTTATTTGATCCAAGATGTTCTGACTATAAATATTATGAATATCAACTTGCTCAAGAGGAAAAGGCCCTTGCACTGTCCAAAGAACCACAGGCAAATCGTAATGTCTTATCCTCAGGGGGTACAGGCGTTTCATCGTCTAGACCAACAAATGGTTCTCAGAGATCATCTCAGCAGCATTCAACCTACCAAATCCCTGCTTCTGCTTTATATGAAAGTGCTGAAATATCAAGGGCTTCTGGATCTTCGGTTCAGGCATATTCAGCAGGAAGCACCGACGAGCCTAGTGGATCATCAAATGCCGATTCTTTAGCACTAATGGAGTTCTACATGAAGAAAGCTGCACAGGAAGAGAAGTTCAGACAGCCTAAGCAGTCAAAGGATGAGATGCCCCCTCCTGCTTCTCTTCAAGCTTCTAGTAAAAAAGGCCATCACATGGGTGATTACATTCCCCAGGAAGAGCTTGAGAAGTTCTTGGCTAGCTGTAATGATGCAGTCGCACAGAAAGCTGCGAAGGAGGCTGCAGAGAAGGCAAAAATCCAGGCTGATAATGTGGGCCACAAGCTTTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGTTCCAGGAAAGGTATTGCAGATCCTATAATGGCAGGCAACGTTAAGAAAGATAACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCGGATGATGACATATACGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGGCACAGACCCAATCCTTTGAACAATCCTCGTAAGGCTTATTATTGA 1320 0.4386 MDKGPPPALFVNDGSFMEKFKQMQQEQEKEKNNKLSEPKPIKVVSGSLAPKPFISRVNDTRKTSQASSSGKLAFSLKQKSKLVPPPVKLADDEEEEEEETDAGDFSNSVQAKRQKFDQEDGTTQPSRQFDVAPPTPSDPMVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDPRCSDYKYYEYQLAQEEKALALSKEPQANRNVLSSGGTGVSSSRPTNGSQRSSQQHSTYQIPASALYESAEISRASGSSVQAYSAGSTDEPSGSSNADSLALMEFYMKKAAQEEKFRQPKQSKDEMPPPASLQASSKKGHHMGDYIPQEELEKFLASCNDAVAQKAAKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGIADPIMAGNVKKDNLGVGAVQPGEVTPDDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31583g00003 439 Coils Coil 17 37 - -
Stsc31583g00003 439 ProSiteProfiles G-patch domain profile. 356 403 IPR000467 GO:0003676
Stsc31583g00003 439 SMART surpneu2 142 196 IPR000061 GO:0003723|GO:0006396
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 57 75 - -
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 200 240 - -
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 255 275 - -
Stsc31583g00003 439 ProSiteProfiles SURP motif repeat profile. 144 187 IPR000061 GO:0003723|GO:0006396
Stsc31583g00003 439 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 439 IPR040169 -
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 22 37 - -
Stsc31583g00003 439 Pfam Surp module 143 192 IPR000061 GO:0003723|GO:0006396
Stsc31583g00003 439 SUPERFAMILY Surp module (SWAP domain) 121 195 IPR035967 GO:0003723|GO:0006396
Stsc31583g00003 439 Pfam G-patch domain 357 400 IPR000467 GO:0003676
Stsc31583g00003 439 Gene3D Surp module 128 198 IPR035967 GO:0003723|GO:0006396
Stsc31583g00003 439 SMART G-patch_5 354 401 IPR000467 GO:0003676
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 21 141 - -
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 205 240 - -
Stsc31583g00003 439 MobiDBLite consensus disorder prediction 290 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31583g00003 Stsc-Chr31583 9450 15184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31583g00003 330 399 C2H2 Transcription Factor Family AT5G26610 40.541 5.61e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31583g00003 K13096 - gmx:100786213 632.098