Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31580g00003 ATGAGTAACAACACCATTATTCTTGTTTTCATCTTCTTCTTTTTCTTTGCAACTCTGCAACACTCCTCCTCTCAAAACATTGATGACACTACCTCATCGTACTCCATTTGCAGCAAACCATTCAGCTGTGGAACACTCATCACCAACGTATCTTACCCTTTCTGGGGAGGAAACAGACCCCAGTTTTGTGGAACCCATGGTTTCAAACTCACCTGCACCACCAACTACAACAATCAAACAACTGCTTCACTTCAAGTTGGTGTGCAAAACTTCCATGTCCTTGCTATCAACCAAACTCAGAGTACCATGAGAATCGTCAGAACAGACTTTATCTATGATCACTGTTCTTCTTCCAATAATAATCTTACCAACACTTCCCTCAACGGAAGTCCCTTCACTTTTCTCCCAAACACCCTTCAAAACATCACTATATTCTATGATTGTCCATCTGGGAATCATTCAGTTCTGGGAGAAACTAACACTTTTACGTGCCAGAATGATAGCAGAAACCACGGTTTCTATGCTGTCAATGCAACTCAGACTCAGCAGTTCCGGAACTGTGGGGTTAGTGTTGAGGTGCAAGTTTCAAGGGACAATGGTGTTTCTGGGAATAATAATCTCAAGAAAGCACTGGATGAAGGGTTTGAAGTGCAGTATGATGCAGATTTGTCTTCAGAGTGCAAAACATGCACTGAATCTGGTGGAGTATGTGGCACCAACAACACTGATTCCTCTGATCAGTTTTCATGTTATTGCCCCACTGGAACTCATGCAGCTTCTTCCTGTTCTTCTCATCATAAGAGTAGTAAGAAGCACAAAGTCTTGAAGCTAGTATTAGGTTTCCTAGGTACTGGAATTGGACTACCTCTGATTGCTGTGATCATATGCCGTAACAAAGCTAAGGTGTGGAAGTTCATAAAGAATCAATTGGGGTTGATGAACAAGCATGATCGAAATCTAGAAGCCTTTCTAGAAAGCCAAGGTCCACTTGGCATAAAAAGATATAGTTTCTCTGATGTGAAGAAAATGACCAACTCCTTCAAACTCAAACTCGGAGAAGGAGGCTATGGTTCTGTTTACAAGGGAAAACTACCCAATGGTTCCTCTGTGGCTGTAAAGATTCTGAATGACTCCAAAGGTAATAATGGTGAAGAATTCATCAATGAAGTTGCCAGCATTAGCAAAACATCCCATGTTAATGTTGTCACTCTGGTCGGGTTCTGCCTCGAAGGAAGCCGAAAAGCTCTAGTCTATGAATTCATGCCTAATGGTTCTCTGGAAAAGTTTATTCATAAAAAGAAAGATCAGAGCACTCCATCCCTGAGTTGGGACAAGCTGTACCAGATTGCAACAGGGATAGCTAAAGGATTGGAGTACTTGCACAAAGGATGCAACACTAAGATTGTACATTTCGACATTAAGCCTCATAATATTCTCTTGGATGAGAATTATCGTCCAAAGATATCGGATTTTGGACTGGCTAAGCTCGGCACGAAGGATGAGAGCATTATGTCAATGTCATATGCTAGAGGGACAATTGGATATGTAGCTCCGGAAATGTGCAACAAGAGTTTAGGAGGCGTGTCTCATAAGTCTGATGTGTATAGTTACGGTATGATGCTGTTAGAAATGGTTGGAGGACACAAGAATGCGAACGTTGAAGCGAGTCGTTCGAGCGAGATATACTTTCCACAATTGCTGATTTACAAGAAGCTTGAGCTTGGGAGTGATTTGGGAGTTGATGGAGTGATGAGTGCAGAAGAAAATGAATTGGCAAAGAAAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCGTCTCAAAGACCAACCATTAGCAGAGTGATTGACATGTTGGAAGGTAGCATGGATTCTATGGAAATGCCACCAAAACCAACACTGTCATCTCCTCCAAGATCCACAACAGACTTTTCCACTGCATCATTGTCAGGGGATAGTGCCTGA 1968 0.4202 MSNNTIILVFIFFFFFATLQHSSSQNIDDTTSSYSICSKPFSCGTLITNVSYPFWGGNRPQFCGTHGFKLTCTTNYNNQTTASLQVGVQNFHVLAINQTQSTMRIVRTDFIYDHCSSSNNNLTNTSLNGSPFTFLPNTLQNITIFYDCPSGNHSVLGETNTFTCQNDSRNHGFYAVNATQTQQFRNCGVSVEVQVSRDNGVSGNNNLKKALDEGFEVQYDADLSSECKTCTESGGVCGTNNTDSSDQFSCYCPTGTHAASSCSSHHKSSKKHKVLKLVLGFLGTGIGLPLIAVIICRNKAKVWKFIKNQLGLMNKHDRNLEAFLESQGPLGIKRYSFSDVKKMTNSFKLKLGEGGYGSVYKGKLPNGSSVAVKILNDSKGNNGEEFINEVASISKTSHVNVVTLVGFCLEGSRKALVYEFMPNGSLEKFIHKKKDQSTPSLSWDKLYQIATGIAKGLEYLHKGCNTKIVHFDIKPHNILLDENYRPKISDFGLAKLGTKDESIMSMSYARGTIGYVAPEMCNKSLGGVSHKSDVYSYGMMLLEMVGGHKNANVEASRSSEIYFPQLLIYKKLELGSDLGVDGVMSAEENELAKKMTMVGLWCIQTIPSQRPTISRVIDMLEGSMDSMEMPPKPTLSSPPRSTTDFSTASLSGDSA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31580g00003 655 Gene3D Phosphorylase Kinase; domain 1 322 420 - -
Stsc31580g00003 655 CDD STKc_IRAK 351 622 - -
Stsc31580g00003 655 MobiDBLite consensus disorder prediction 624 655 - -
Stsc31580g00003 655 ProSiteProfiles Protein kinase domain profile. 345 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31580g00003 655 Pfam Wall-associated receptor kinase C-terminal 173 254 IPR032872 -
Stsc31580g00003 655 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Stsc31580g00003 655 PANTHER RUST RESISTANCE KINASE LR10-RELATED 315 637 IPR045874 GO:0004672
Stsc31580g00003 655 MobiDBLite consensus disorder prediction 638 655 - -
Stsc31580g00003 655 Gene3D Transferase(Phosphotransferase) domain 1 421 632 - -
Stsc31580g00003 655 FunFam PR5-like receptor kinase 421 632 - -
Stsc31580g00003 655 SUPERFAMILY Protein kinase-like (PK-like) 325 621 IPR011009 -
Stsc31580g00003 655 SMART serkin_6 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31580g00003 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Stsc31580g00003 655 Pfam Wall-associated receptor kinase galacturonan-binding 37 107 IPR025287 GO:0030247
Stsc31580g00003 655 FunFam serine/threonine-protein kinase PBS1-like 313 420 - -
Stsc31580g00003 655 Pfam Protein kinase domain 350 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31580g00003 Stsc-Chr31580 10406 13780 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31580g00003 37 635 Receptor kinase-like Gene Family AT5G38260 41.748 3.41e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc31580g00003 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31580g00003 - - vra:106766588 875.544