LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc31580g00002	ATGGTGAAGAACATGCAGAAGCTGTTCTCAGCAGGGCTGGAGCCATTGCTAAGAAGAGTGGTAAATGAAGAAGTGGAACGAGTCATAATGAGACACCACCATCCCTACACACGCTCTCCATCACTCAGGATTGAAGCAGCAGCACCATCATCATCATCATCAGAGCAACAATCCAAGTTGCAACTCATGTTCACCAACAAGCTTTCCCTCCCAATATTCACAGCAAGCAGAATACTCGACATTCAAGGGAACCCCATGCAAGTGATTCTCGTTCACAGAACCAACAAAGATCAAATTGTTCGAACAAGCCTTCCCTATCCCGTAAAGCTAGAGCTCGTGGTTCTTGATGGTGATTTTCCGGGCGACGGCGACGATTCGTGGTGCAGCGAGCAGTTTAAGAGGCATATAGTGAAGGAGAGAACGGGGAAGAGGCCGTTGCTGACTGGAGAATTGAGCCTGACGATGAGGGATGGGATTGCAGGGATGAATGGGGACATTGAGTTCACGGATAACTCAAGCTGGATCCGTAGCAGAAAGTTCAGAGTTGCTGTCAGGGTTGCTCCTAACCAACAAGGTGATGGTCTCAGAATTCGTGAAGGATTCACTGAACCCTTCGTAGTTAAGGATCATCGTGGTGAATTGTACAAAAAGCATCACCCACCAATGCTGGAGGACGAAGTGTGGCGCCTTGAAAAGATTGGAAAAGATGGAGCTTTCCACAAAAAGCTCTCAGCAGAGGGGATTAATACAGTCCAAGAATTCCTCAAGTTATCCGTTCTTGATCCTCAATTGCTTAGAAAGATATTAGGGGTTGGAATGTCAGAGAAGATGTGGGAAGTGACAATAAAGCATGCAAAGACATGTAAGATGGGTAACAAAGCTTATATGTACACCCGCCCTAATTGTACTATCTATCTCAATCCAATATGCCAGTTGATTAGAGCTGATATCAATGGCCAGATCCTGGTAGGCAGAGACCTAAACAGCATCAATAAGATCTATTTAGAGAAGATGGTGAGAGAAGCACATGGTAGATGGAATGAGTTGGAGGAAATTGATCATGCCATTTTGAATGATAACGCTGCTTTGTTAACACAAGGAGGAGAACAATTATTTGCAAACAACGCAGGAAGTAATACACTTGAATATGATGAAAGAGAGTATTTTGGTGAGGAAGCAGCAGGAGCAGGTGGTAATGGATATTTGCCAAGCAGTAGCCATAGCCAGAGCCATAATAATGAGTGCATAGAGTGGGGAGTGAATGCACCATTTGATGATGCAACACAGGTGCTGAATGTCAATGCCATGGCTTACGGCTTCTCATCAAAGAGTGGAGCTTCAACTTCTGATTCTGACATGTGGCCTAATTAA	1371	0.4471	MVKNMQKLFSAGLEPLLRRVVNEEVERVIMRHHHPYTRSPSLRIEAAAPSSSSSEQQSKLQLMFTNKLSLPIFTASRILDIQGNPMQVILVHRTNKDQIVRTSLPYPVKLELVVLDGDFPGDGDDSWCSEQFKRHIVKERTGKRPLLTGELSLTMRDGIAGMNGDIEFTDNSSWIRSRKFRVAVRVAPNQQGDGLRIREGFTEPFVVKDHRGELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAEGINTVQEFLKLSVLDPQLLRKILGVGMSEKMWEVTIKHAKTCKMGNKAYMYTRPNCTIYLNPICQLIRADINGQILVGRDLNSINKIYLEKMVREAHGRWNELEEIDHAILNDNAALLTQGGEQLFANNAGSNTLEYDEREYFGEEAAGAGGNGYLPSSSHSQSHNNECIEWGVNAPFDDATQVLNVNAMAYGFSSKSGASTSDSDMWPN	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc31580g00002	456	PANTHER	OS02G0177800 PROTEIN	3	424	IPR012416	GO:0005516
	Stsc31580g00002	456	Pfam	Calmodulin binding protein central domain	222	288	IPR046830	-
	Stsc31580g00002	456	Pfam	Calmodulin binding protein-like N-terminal domain	60	210	IPR046831	-
	Stsc31580g00002	456	Pfam	Calmodulin binding protein C-terminal domain	293	352	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc31580g00002	Stsc-Chr31580	3091	6303	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc31580g00002	2	359	Calmodulin-binding Proteins	AT5G57580	47.368	8.23e-102	315

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc31580g00002	-		-	aip:107644281	486.493