Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31560g00001 ATGCCCAGCTTCTCCTCTCTCCCTGGGTGGATTGCTCGACTATTCAATTCTCCTTCCTCAATTTCAAACGGCACCAACGGAGGAGATAGTACTATCAGCGATCCTGTGGCTGATTACAGCACTGGACCGGTGGAGTGTTATGCCTGCACGCAAGTAGGTGTGCCGGCGTTCCACTCCACCAGCTGTGACAGTTTTCATCAGCCACAATGGGAGGCTTCTGCGGGATCCTCCCTAGTCCCCATCCAGAATCGGTCCGGAAAAGCTCCAACTATCCGGACAAGAATCCAGACACAGTCGGGGCCATTCGGACAGGTTCTGGATCCGAGGAGCAAGCGTGTGCAAGTATGGAACCGGGCACTATTGCTAGCGCGTGGAGTGGCGCTGGCAATAGACCCCTTGTTCTTCTACGCGCTCTCCATCGGGAGAGGAGGGTCGCCGTGCCTGTACATGGACGGAGGGCTGGCGGCGATTGTGACGGTGGTGCGAACGTGTGTGGACGCGGTGCATCTGTTTCACGTGTGGCTGCAGTTCAAGGTGGCGTATGTTTCTCGAGAGTCGATGGTTGTGGGGTGCGGGAAGCTTGTGTGGGACGCGCGTGCAATCGCGTCGCACTACCTGCGATCGATGAAGGGCTTTTGGTTTGATGCGTTTGTAATCCTCCCAGTACCGCAGGCTGTGTTTTGGTTGATAGTACCAAAATTGATAAGAGAAGAGAAAATCAAGATCATTATGACGATAATGCTCTTGATTTTCTTGTTCCAATTTCTCCCTAAGGTTTACCACAGCATCTGCATGATGAAAAGAATGCAGAAAGTCACAGGCTACATATTTGGCACCATTTGGTGGGGTTTTGGCCTTAATCTCATAGCATACTTCATTGCTTCACATGTAGCTGGAGGGTGCTGGTATGTTCTTGCGATTCAACGAGTGGCGTCGTGCCTCCAGCAACAATGCGATTCGACGATGGGATGCAACCTTTCTCTGGCATGCTCTGAGGAGGTATGCTACAAGTTTCTGTTGTCATCATCATCAGGGACAGTGGGAGATGCTTGTAATGGAAATGGAAACTCATCATCATCAGTTGTGGTGAGAACACCTATGTGCTTAGATACTGAAGGCCCTTTCAGATATGGAATCTACCAATGGGCACTTCCTGTCATATCAAGCAATTCCTTGGCTGTCAAGATTCTCTATCCCATTTTTTGGGGTTTGATGACACTCAGTACTTTTGGTAATGATCTTGAGCCAACAAGTAACTGGCTAGAAGTGATTTTCAGTATTTGCATTGTGCTCAGTGGATTACTGCTATTCACTTTGTTGATTGGTAACATTCAGGTGTTTTTGCATGCTGTCATGGCGAAGAAGAGAAAGATGCAGCTGAGGTGTCGCGACATGGAATGGTGGATGAGGAGGAGGCAGCTGCCTTCGCGATTAAGGCAGAGAGTTCGCCATTTCGAACGCCAGAGATGGGCAGCCATGGGAGGAGAAGATGAGATGGAATTGATTAAAGACTTGCCGGAGGGGCTAAGGCGAGACATCAAGCGCTATCTTTGCCTCGACCTTATAAAAAAGGTACCTCTTTTCCACAATTTGGATGATCTTATACTAGACAACATATGTGACAGGGTTAAGCCCCTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGTGATCCAGTACCAAGGATGGTGTTCATCGTCCGAGGACGAATAAAGCGCAACCAAAGCCTTAGCAAAGGCATGGTTGCATCTAGCATCCTTGAACCAGGAGGCTTTTTAGGGGATGAGCTTCTTTCATGGTGCCTTAGGCGGCCGTTTATAGACCGCCTTCCGGCTTCCTCGGCCACATTTGTGTGCCTAGAACCAACAGAAGCATTTGGCCTTGATTGCAAACACCTTAGGTACATCACTGATCACTTCAGATACAAGTTTGCCAATGAGAGGCTGAAGCGAACGGCGAGGTACTACTCGTCCAATTGGAGAACTTGGGCTGCCGTCAACATTCAATTTGCGTGGCGGCGTTACAGGCAGAGGACTAGAGGTCCGGTGACCCCTGTAAGGGAAAATGGTGGCGGCGGTGGCACGGAACGCAGGCTCTTGCAGTATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATGA 2154 0.494 MPSFSSLPGWIARLFNSPSSISNGTNGGDSTISDPVADYSTGPVECYACTQVGVPAFHSTSCDSFHQPQWEASAGSSLVPIQNRSGKAPTIRTRIQTQSGPFGQVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGRGGSPCLYMDGGLAAIVTVVRTCVDAVHLFHVWLQFKVAYVSRESMVVGCGKLVWDARAIASHYLRSMKGFWFDAFVILPVPQAVFWLIVPKLIREEKIKIIMTIMLLIFLFQFLPKVYHSICMMKRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQQCDSTMGCNLSLACSEEVCYKFLLSSSSGTVGDACNGNGNSSSSVVVRTPMCLDTEGPFRYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLEPTEAFGLDCKHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRENGGGGGTERRLLQYAAMFMSIRPHDHLE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31560g00001 717 ProSiteProfiles cAMP/cGMP binding motif profile. 527 606 IPR000595 -
Stsc31560g00001 717 Pfam Ion transport protein 114 445 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc31560g00001 717 Gene3D Jelly Rolls 525 643 IPR014710 -
Stsc31560g00001 717 Gene3D Helix hairpin bin 453 518 - -
Stsc31560g00001 717 Gene3D - 147 450 - -
Stsc31560g00001 717 CDD CAP_ED 527 637 IPR000595 -
Stsc31560g00001 717 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 96 680 - -
Stsc31560g00001 717 SUPERFAMILY cAMP-binding domain-like 454 641 IPR018490 -
Stsc31560g00001 717 SUPERFAMILY Voltage-gated potassium channels 107 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31560g00001 Stsc-Chr31560 1274 7442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31560g00001 44 717 Ion Channels AT5G15410 80.294 0.0 1066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31560g00001 K05391 - gmx:100798823 1182.55