Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31549g00001 ATGAATGCACTTCCAAATCTGGCTTTCATAGTAGAGGTAAAAGTAGCAACAACCAGAATTTTCCAAATGATTGATCAAGCACCAATCATTAACTCTCACAAACAAAAAGAAAAGATCTTAAGCCATGTGAGAGGAGAAATCACATTCAAACAGATCGAATTCGCTTACCCTTCGAGGCCAGACACACAGATCCTCCAAGGACTAAATCTGAAATTTCCAGCATGTAAAACGATAGGCCTAGTTGGAGGTAGTGGCTCTGGAAAATCCACGATAATCTCTTTGATTGAAAGGTTCTATGATCCTTTATATGGTGAGATATTGCTTGATGGATATGATATAAAGATGCTTGAGCTTAAGTGGCTGAGGTCACAAATGGGGCTTGTTAATCAGGAGCCTATTCTGTTTGCAACATCAATTAGGGAGAATATTCTGTTTGGCAAGGAAGGTGCTTCCATGGAAGCTGTTATAAGTGCAGCTAAGGCTGCAAATGCACATGATTTCATTGTTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAGCTTGGAGCTCAGTTATCTGGAGGACAGAAACAAAGGATTGCAATAGCAAGAGCCCTAATTCGAAACCCGAAAATTCTACTGCTTGATGAAGCAACAAGTGCATTGGATTCACAATCTGAAAGAATAGTGCAGGAGGCCCTTGATTTGGCTTCAAGAGGAAGGACAACAATCATTGTAGCTCATCGCTTATCGACGATTCGAAACGCAGACTCGATAGTAGTCCTTCAATCTGGAAGAGTTCTTGAATCTGGCTCCCATGATGAGCTACTCAAACTTAACAATGGACAAGGTGGTGCTTATAGCAAAATGCTAAAGCTACAACAACAACAAACAACTCAAAATGAAGATTATTCAACATTGAATAATCATGGGAACAAGAGTCCCCAAGTTATGTCATATTTAACAAGTCCAAGATCAGTTCCAGGCACTCCAGTTCATCATTCATTCGCCTCGGCGCAACCATTTACACCAATATACTCAATCAGTGTTCCGGGGTCCCCTCTTGATGACTACACTGAGAATTCAGAGGTTTCTTCCAAAGCAAGCTTCTCACAATGGCGTTTGCTAAGAATGAATTCCCCTGAGTGGAAGTATGCTCTTCTAGGATGTTTAGGCGCGACCGGATCCGGAATTTGCCAGCCTTTATTTTCTTATATCCTCGGATTCGTCGCGTCTATCTACTTTATAACAGATCACTCCCGTGTCATCTCGAAAATCAAGCTGTACTCAACAATTTTCTGCATCATAGCAGTTGTCAGCTTCATATCAGGCCTAATTCAGCACTTCAGTTTCGCCATCATGGGCGAGAAATTGCTAAAAAGGGTGAGAGAGAATCTTCTAGAGAAGATCCTCACATTTGAAATAGGATGGTTTGATCAGGAAGCTAACACGAGCGCAGCCATCTGCGCTCGTTTAGCTTCTGATGCAAACTTGGTCAGGTCCCTCGTCGCGGAACGAATCTCCTTACTAGTTCAAGTATTTGTGACTGCAACCCTGGCTTTCACACTTGGTTTATATGTCTCATGGAAGGTGGCAATGGTAATGATAGCAATGCAGCCTTTGATCATTGCTTGTTTCTACTCGAAACTCGTGGTGACGAAAAGCATGTCAGGTAAAGCAAGAAAGGCTCAAGGTGAAAGCAGTCAATTAGCAATGGAAGCTACCATTAACCATAGAACTATTGCTGCATTTTCATCAGAGAAAAGGGTGTTGAATTTGTTCAAAGCTTCAATGAGAGGACCTCATTTGGAAACCATAAAGCAATCATGGATTACAGCTTCAATCTTGTCACTGTCACAGTTCATAACTACAGCTTCTATAACCTTAACATTTTGGTATGGAGGGTTGCTACTAAACAAAAAGATGCTGAGTTCAAATCAGCTTCTGCAAGTTTTCTTGATACTGATGGGAACTGGAAGACAAATTGCTGAGGCAGGAAGCATGACTTCAGACATAGCAAGAAGCGGGAAAGCCGTGAGCTCGGTTTTCGAGATCTTGGACAGGAAAACTCAGATTGAACCTGAAGATCCTAGGCTGATGAAGTTTAGAAAGAAGAACAACATAAAGGGTCATGTGAGATTAAAAGATGTGTTCTTCTCATACCCATCAAGGCCAGAACAGATGATCCTGAAGGGTCTTAGTCTTGAGATTGAAGCTGGGAAAACAGTTGCATTGGTGGGACAAAGTGGGTCAGGGAAATCCACAGTGATTGGACTGATTGAAAGATTTTATGATCCCATTAATGGAACAATATTTATAGATGGTTGTGACATTAGGGAATTTGATTTGAGAAGTTTGAGGTCACATATTGCATTGGTGAGTCAAGAGCCTGCACTCTTTGGTGGAAGTATACGTGATAACATTGTGTATGGCAAGATTGATGCTTCTGAAGATGAAATAAGAAAGGCAGCACGTCTTGCAAATGCTCATGAGTTTATAAGTTCAATGAGAGATGGGTATGACACATTCTGTGGAGAAAGAGGAGTGCAGCTTTCAGGGGGACAGAAGCAGAGGATTGCAATTGCCAGAGCAATACTAAAGAACCCTTCAATCCTTCTCCTGGACGAAGCAACAAGTGCTCTTGACAGTGTTTCAGAGAATCTAGTGCAAGACTCCCTGGAGAAAATGATGGTTGGAAGAACATGTGTGGTTATTGCTCATCGTTTGTCTACAATTCAGAATGTGGACACCATTGCTGTGATCAAGAATGGGAAATTGGTGGAGCAAGGATCACACCATGAGTTAATGAATGTTGGATCAAGGGGTGCTTACTACTCCTTGGTTAGGCTACAACATGGGAGGACTAACTCTATCATCTGA 2862 0.4168 MNALPNLAFIVEVKVATTRIFQMIDQAPIINSHKQKEKILSHVRGEITFKQIEFAYPSRPDTQILQGLNLKFPACKTIGLVGGSGSGKSTIISLIERFYDPLYGEILLDGYDIKMLELKWLRSQMGLVNQEPILFATSIRENILFGKEGASMEAVISAAKAANAHDFIVKLPNGYETQVGQLGAQLSGGQKQRIAIARALIRNPKILLLDEATSALDSQSERIVQEALDLASRGRTTIIVAHRLSTIRNADSIVVLQSGRVLESGSHDELLKLNNGQGGAYSKMLKLQQQQTTQNEDYSTLNNHGNKSPQVMSYLTSPRSVPGTPVHHSFASAQPFTPIYSISVPGSPLDDYTENSEVSSKASFSQWRLLRMNSPEWKYALLGCLGATGSGICQPLFSYILGFVASIYFITDHSRVISKIKLYSTIFCIIAVVSFISGLIQHFSFAIMGEKLLKRVRENLLEKILTFEIGWFDQEANTSAAICARLASDANLVRSLVAERISLLVQVFVTATLAFTLGLYVSWKVAMVMIAMQPLIIACFYSKLVVTKSMSGKARKAQGESSQLAMEATINHRTIAAFSSEKRVLNLFKASMRGPHLETIKQSWITASILSLSQFITTASITLTFWYGGLLLNKKMLSSNQLLQVFLILMGTGRQIAEAGSMTSDIARSGKAVSSVFEILDRKTQIEPEDPRLMKFRKKNNIKGHVRLKDVFFSYPSRPEQMILKGLSLEIEAGKTVALVGQSGSGKSTVIGLIERFYDPINGTIFIDGCDIREFDLRSLRSHIALVSQEPALFGGSIRDNIVYGKIDASEDEIRKAARLANAHEFISSMRDGYDTFCGERGVQLSGGQKQRIAIARAILKNPSILLLDEATSALDSVSENLVQDSLEKMMVGRTCVVIAHRLSTIQNVDTIAVIKNGKLVEQGSHHELMNVGSRGAYYSLVRLQHGRTNSII 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31549g00001 953 Pfam ABC transporter transmembrane region 382 649 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc31549g00001 953 Gene3D - 692 950 IPR027417 -
Stsc31549g00001 953 SUPERFAMILY ABC transporter transmembrane region 368 688 IPR036640 GO:0005524|GO:0016020
Stsc31549g00001 953 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 283 IPR003439 GO:0005524
Stsc31549g00001 953 Pfam ABC transporter 724 873 IPR003439 GO:0005524
Stsc31549g00001 953 SMART AAA_5 74 260 IPR003593 GO:0016887
Stsc31549g00001 953 SMART AAA_5 733 919 IPR003593 GO:0016887
Stsc31549g00001 953 Pfam ABC transporter 65 214 IPR003439 GO:0005524
Stsc31549g00001 953 CDD ABC_MTABC3_MDL1_MDL2 47 287 - -
Stsc31549g00001 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 288 IPR027417 -
Stsc31549g00001 953 CDD ABC_MTABC3_MDL1_MDL2 706 945 - -
Stsc31549g00001 953 Gene3D ABC transporter type 1, transmembrane domain 347 691 IPR036640 GO:0005524|GO:0016020
Stsc31549g00001 953 PANTHER ABC TRANSPORTER B FAMILY 354 944 IPR039421 -
Stsc31549g00001 953 FunFam ABC transporter B family member 4 696 950 - -
Stsc31549g00001 953 Gene3D - 37 289 IPR027417 -
Stsc31549g00001 953 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 706 942 IPR003439 GO:0005524
Stsc31549g00001 953 FunFam ABC transporter B family member 4 37 296 - -
Stsc31549g00001 953 ProSitePatterns ABC transporters family signature. 845 859 IPR017871 GO:0005524|GO:0016887
Stsc31549g00001 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 945 IPR027417 -
Stsc31549g00001 953 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Stsc31549g00001 953 Gene3D ABC transporter type 1, transmembrane domain 2 306 IPR036640 GO:0005524|GO:0016020
Stsc31549g00001 953 CDD ABC_6TM_Pgp_ABCB1_D2_like 370 686 - -
Stsc31549g00001 953 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 381 668 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31549g00001 Stsc-Chr31549 1086 6174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31549g00001 382 947 Calmodulin-binding Proteins AT2G36910 37.653 5.02e-114 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31549g00001 K05658 - gmx:100804664 1431.39