Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31548g00001 ATGAAAAATAATGTCAAAATTGTGGGAAGAAACCCTAAGAAAGGCTCTTCTTCTTCTGAATCCTTGATCAAAGGACAATGGTCTCCTGAGGAAGACAGGAAACTGGAGAAGCTGGTGAAGCAACATGGCATAAGAAAGTGGTCACAAATAGCTGAGAAATTGGAGGGAAGAGCTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGCCCTGATATTAAGAAAGATGGTTGGAGTGAAGAAGAAGAGAGGATTCTGGTGGAGACTCATGCCAAGGTCGGAAATAGATGGGCAGAGATCGCAAAGCGAATACCGGGTCGAACCGAGAACTCAATCAAGAACCATTGGAATGCAACAAAGAGAAGGCAGAACTCAAGGAGAAAGAACAAGAAGCCTTCATCATCTTCAACCAACTCAAACAATAATGGAAAACCACAATCTTCAATTCTCCAAGACTACATTAGAAGCAAAACCCTAATTGGTACCAATAATATCACTTCTCCTATTACTACTACTACCACCACCACTGCTATTACTAGTGAATCTGAATCTATCACTAATAATAGTGATGATAATAATAATCCATATTATTCATCACCAGCAATCATTGCTGAATCATATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATAATCATGTAGTCAATGGAGATGGTGTTGTGAAGAACACTAATAATGGTGAATGTGGTGATGGGTTTGTTCCTTCTTCCAATTATTATCATCCTCCAATTCCATGGAACATTCACAACCCCCTCAATAATAATAATTGTTACCTTGATTCTGATCTCTATATCTCTCAATTGATGAACAATGGAGGTGCAACAAGTTCACCATCATCATCACTTTGCAATGATCAAAGGGCTTATGAGAAGAATCACAACATGGATTTTGATGAGTTGGTGGTTAAGATTCAAGATTGTTCAGATGTGAAGAAAAGGGAGATGGATTTGTTAGAGTTAGTTTCCACTCATAATCAGTTTTAA 1020 0.3824 MKNNVKIVGRNPKKGSSSSESLIKGQWSPEEDRKLEKLVKQHGIRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKVGNRWAEIAKRIPGRTENSIKNHWNATKRRQNSRRKNKKPSSSSTNSNNNGKPQSSILQDYIRSKTLIGTNNITSPITTTTTTTAITSESESITNNSDDNNNPYYSSPAIIAESYDDELLFMQQLFKENNNHVVNGDGVVKNTNNGECGDGFVPSSNYYHPPIPWNIHNPLNNNNCYLDSDLYISQLMNNGGATSSPSSSLCNDQRAYEKNHNMDFDELVVKIQDCSDVKKREMDLLELVSTHNQF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31548g00001 339 Gene3D - 77 149 - -
Stsc31548g00001 339 MobiDBLite consensus disorder prediction 107 149 - -
Stsc31548g00001 339 FunFam Transcriptional activator Myb isoform A 23 76 - -
Stsc31548g00001 339 CDD SANT 79 121 IPR001005 -
Stsc31548g00001 339 SMART sant 75 123 IPR001005 -
Stsc31548g00001 339 SMART sant 23 72 IPR001005 -
Stsc31548g00001 339 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Stsc31548g00001 339 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Stsc31548g00001 339 CDD SANT 27 70 IPR001005 -
Stsc31548g00001 339 MobiDBLite consensus disorder prediction 131 149 - -
Stsc31548g00001 339 Gene3D - 23 75 - -
Stsc31548g00001 339 PANTHER MYB PROTEIN-RELATED 24 145 - -
Stsc31548g00001 339 Pfam Myb-like DNA-binding domain 27 84 - -
Stsc31548g00001 339 MobiDBLite consensus disorder prediction 1 28 - -
Stsc31548g00001 339 ProSiteProfiles Myb-like domain profile. 19 70 IPR001005 -
Stsc31548g00001 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 74 IPR017930 -
Stsc31548g00001 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Stsc31548g00001 339 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31548g00001 Stsc-Chr31548 3392 5637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31548g00001 18 334 MYB Transcription Factor Family AT5G58850 46.471 1.56e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc31548g00001 Myb_DNA-bind_6 1.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31548g00001 K09422 - gmx:100786295 263.077