Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31538g00003 ATGGACACTACTCACGCTAATGGTGATGCCACCTTCTGCCTCACTGCCAATCACGGACAACCACGTCATGATCCATTGAACTGGGGCGTGGCAGCAGATGCGCTCAAAGGGAGCCACTTGGACGAGGTTAAGAGAATGGTCTCCGAGTACCGCAAGCCTCTAGTTAAGCTTGGTGGGGAGACTTTAACTATATCTCAGGTGGCCGCCATTGCTGCTAATGATCAAGGTGTCTCCGTCCAGCTCTCTGAGGCTTCCAGGGCTGGAGTTAAGGCTAGTAGTGACTGGGTTATGGATAGCATGAACAATGGTACTGACAGCTACGGTGTCACCACCGGATTTGGTGCCACTTCTCATCGCAGAACTAAACAGGGCGGTGCCTTGCAGAAAGAGCTCATTAGGTTCTTGAATGCTGGAATATTTGGCAACGGCACAGAGACAAATTGCACATTGCCACACACAGCTACTAGAGCAGCAATGCTAGTGAGGATCAACACACTCCTCCAAGGCTACTCAGGAATCAGATTTGAGATCTTGGAAGCCATAACCAAGCTTCTCAACAACAACATTACACCGTGTTTGCCACTTAGGGGAACAATCACAGCCTCAGGTGACCTTGTTCCATTGTCTTATATTGCTGGTTTGTTAACAGGCAGACCAAATTCGAAGGCTGTTGGACCCAATGGAGAGACCCTTAACGCAAAAGAAGCATTCCAAGCTGCCGGAATCGGATCCGAGTTCTTCGAGTTGCAGCCTAAAGAAGGCCTTGCACTAGTGAATGGCACTGCTGTTGGTTCTGGACTGGCCTCAGTTGTTCTATTTGAGGCCAATATCCTAGCTGTCTTGTCGGAGGTTCTTTCGGCGATATTCGCGGAGGTGATGCAGGGGAAGCCAGAGTTCACAGACCATTTGACACACAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCCATCATGGAACACATTTTGGATGGTAGCTCATATGTTAAAGCCGCCAAGAAGTTGCACGAGATTGATCCCTTGCAAAAGCCTAAACAGGACCGATATGCACTTAGGACTTCACCTCAATGGCTTGGCCCTTTGATTGAAGTGATTAGATTCTCAACCAAATCAATTGAGAGGGAAATTAACTCCGTTAATGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGTGGTAACTTTCAAGGTACTCCAATTGGTGTGTCTATGGATAACACAAGATTGGCCATTGCATCAATTGGGAAACTCATGTTTGCTCAATTCTCTGAGCTCNNNNNNNNNNCAAATCTAAGTGCTAGTAGGAACCCCAGCTTGGATTATGGCTTCAAGGGCACTGAAATCGCCATGGCCTCTTACTGTTCCGAGCTGCAATATCTTGCAAACCCGGTAACTAGCCATGTCCAGAGTGCTGAGCAGCATAACCAAGATGTGAACTCTCTTGGTTTGATTTCAGCTAGGAAAACAAATGAAGCTGTTGAGATTCTCAAACTTATGTCATCCACCTTCTTGATCGCACTTTGCCAAGCCATTGATTTGAGGCATCTGGAGGAGAATTTGAAGAACACTGTGAAGAACACTGTGAGCCAAGTTGCCAAGAGGACACTGACCACCGGCGTCAACGGCGAGCTCCACCCATCAAGATTCTGCGAGAAGGATCTTCTCAAGATTGTTGATAGGGAGTATTGTTTTGCATACATTGATGATCCTTGCAGTGCTACGTACCCTTTGATGCAGAAGCTAAGGCAAGTTTTGGTGGAACATGCACTTGCAAATGCTGAAAACGAGAAGAATGTGAACACCTCTATCTTCCAGAAAATTACAAGCTTTGAGGAAGAATTGAAGACCCTTTTGCCTAAAGAAGTTGAGGGTGCAAGAATTGCTTATGAGAATGGACAAAGTGCGATACCAAACAAGATCAAGGAATGCAGGTCGTATCCATTGTACAAGTTCGTGAGGGGAGAGTTGGGAACTGAGATGCTAACCGGTGAGAAGGTTAGGTCCCCTGGTGAAGAATGTGACAAGTTGTTCACTGCAATGTGCCAAGGGAAGATCATTGATCCTCTTCTTGAGTGCATTGGAGAGTGGAATGGTGCTCCTCTTCCATTATGTTAG 2127 0.4659 MDTTHANGDATFCLTANHGQPRHDPLNWGVAADALKGSHLDEVKRMVSEYRKPLVKLGGETLTISQVAAIAANDQGVSVQLSEASRAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETLNAKEAFQAAGIGSEFFELQPKEGLALVNGTAVGSGLASVVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELXXXXNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISARKTNEAVEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKIVDREYCFAYIDDPCSATYPLMQKLRQVLVEHALANAENEKNVNTSIFQKITSFEEELKTLLPKEVEGARIAYENGQSAIPNKIKECRSYPLYKFVRGELGTEMLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECIGEWNGAPLPLC 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31538g00003 708 CDD PAL-HAL 60 518 IPR001106 -
Stsc31538g00003 708 Gene3D Fumarase/aspartase (Central domain) 262 703 - -
Stsc31538g00003 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Stsc31538g00003 708 Pfam Aromatic amino acid lyase 62 531 IPR001106 -
Stsc31538g00003 708 FunFam Phenylalanine ammonia-lyase 15 261 - -
Stsc31538g00003 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Stsc31538g00003 708 Gene3D - 15 261 IPR024083 -
Stsc31538g00003 708 NCBIfam phenylalanine ammonia-lyase 24 697 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc31538g00003 708 SUPERFAMILY L-aspartase-like 24 708 IPR008948 GO:0003824
Stsc31538g00003 708 PANTHER HISTIDINE AMMONIA-LYASE 19 708 IPR001106 -
Stsc31538g00003 708 Gene3D - 521 642 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31538g00003 Stsc-Chr31538 10179 14169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31538g00003 9 708 Monolignol Biosynthesis Gene Families AT2G37040 80.591 0.0 1202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31538g00003 K10775 - gmx:100803857 1258.05