Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31526g00001 ATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATTTCCGTCATGGTCATAGCCTGCCCATGTGCTTTAGGATTAGCAACACCAACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAAGGTGTGCTGATCAAAGGAGGACAGGCATTAGAAAGTGCGCACAAGGTAAACTGCATTGTTTTTGACAAGACAGGTACCCTTACTATTGGAAAGCCTGTGGTGGTAAATACAAAACTATTGACAAATATGGTACTACAAGAATTCTATGAGCTTGTGGCTGCCGCTGAGGTGAACAGTGAGCATCCACTGGCTAAGGCTATAGTTGAGTATGCCAAAAAACTGAGAGATGAAGAGAATCCTGCTTGGCCAGAAGCAAAGGATTTTGTCTCCATTACTGGACATGGAGTGAAGGCCACTGTTCGGAACAAGGAAGTAATAGTGGGAAACAAGAGCTTGATGGTTGAACACGATGTTGTAGTTCCTGCAGATGCTGAAGATATACTAGCAGAAGCTGAAGAGATGGCTCAAACTGGCATTTTAGTATCTATAGCTGGGGAACTAGTTGGAGTTTTAGCAATATCTGATCCACTGAAACCCAGTGCACAAGAAGTCATTTCCATTCTCAAGTCCATGAAAATAAGGAGCATCATGGTGACTGGGGACAACTGGGGTACTGCAAATTCTATAGCAAAGGAAGTTGGAATTGAAACTGTTATTGCTGAGGCCAAACCAGAGCATAAGGCAGAGAGAGTTAAGGACTTGCAGGCTTCTGGATGCATAGTGGCTATGGTGGGGGATGGTATAAATGACTCACCAGCACTTGTAGCAGCAGATGTAGGAATGGCAATTGGTGCTGGCACCGACATTGCTATTGAGGCTGCTGATATTGTCTTGATGAAAAGCAACTTGGAGGATGTCATAACTGCCATAGATCTTTCTAGGAAAACATTTTCGCGTATAAGACTCAATTACATTTGGGCCTTGGGATATAATCTTCTTGGAATCCCAATTGCTGCCGGAGCTCTTTTCCCTTCTACAGGATTTCGGTTGCCACCATGGATTGCCGGTGCTGCTATGGCCGCCTCTTCAGTCAGTGTTGTTTGTTGTTCTCTTCTATTGAAATATTACAGGAGACCTAAGAAGCTGGACAACCTTGAAATAAGGGGCATAAGCATTGAATGA 1185 0.4422 MDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVVVNTKLLTNMVLQEFYELVAAAEVNSEHPLAKAIVEYAKKLRDEENPAWPEAKDFVSITGHGVKATVRNKEVIVGNKSLMVEHDVVVPADAEDILAEAEEMAQTGILVSIAGELVGVLAISDPLKPSAQEVISILKSMKIRSIMVTGDNWGTANSIAKEVGIETVIAEAKPEHKAERVKDLQASGCIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYRRPKKLDNLEIRGISIE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31526g00001 394 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 390 - -
Stsc31526g00001 394 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 344 IPR023298 -
Stsc31526g00001 394 FunFam Probable copper-transporting ATPase HMA5 168 322 - -
Stsc31526g00001 394 NCBIfam heavy metal translocating P-type ATPase 6 374 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc31526g00001 394 SFLD C1.7: P-type atpase like 43 317 - -
Stsc31526g00001 394 Pfam haloacid dehalogenase-like hydrolase 57 279 - -
Stsc31526g00001 394 ProSitePatterns E1-E2 ATPases phosphorylation site. 63 69 IPR018303 -
Stsc31526g00001 394 PRINTS P-type cation-transporting ATPase superfamily signature 212 222 - -
Stsc31526g00001 394 PRINTS P-type cation-transporting ATPase superfamily signature 265 284 - -
Stsc31526g00001 394 PRINTS P-type cation-transporting ATPase superfamily signature 61 75 - -
Stsc31526g00001 394 PRINTS P-type cation-transporting ATPase superfamily signature 288 300 - -
Stsc31526g00001 394 PRINTS P-type cation-transporting ATPase superfamily signature 190 201 - -
Stsc31526g00001 394 Gene3D - 145 196 IPR023299 GO:0000166
Stsc31526g00001 394 Gene3D - 68 144 IPR023299 GO:0000166
Stsc31526g00001 394 Gene3D - 28 322 IPR023214 -
Stsc31526g00001 394 SUPERFAMILY HAD-like 60 371 IPR036412 -
Stsc31526g00001 394 SFLD p-type atpase 43 317 IPR044492 -
Stsc31526g00001 394 NCBIfam HAD-IC family P-type ATPase 7 349 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31526g00001 Stsc-Chr31526 8156 9745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31526g00001 1 394 Primary Pumps ATPases AT1G63440 85.823 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31526g00001 K17686 - gmx:100789164 684.1