Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31484g00003 ATGTCAAGCTCTCTTGCAGCAATATTAGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGTTATAATACTCATATGGTTTTGTATTACTCACAAGAGAAGCGTTTCGAGAACTTCAGAGACAGGATCCTCTGATCCTTCCCAAGTAGGACGACATGGTGCGATTGAGTTGTCGATTCGAGATACTAGGCGTTTCGAGATGGACGAACTATCAGTGGCTACAAAGAATTTCAGTGACAAGAATTTGATTGGGGAAGGGAAGTTTGGGGAGGTTTATAAGGGTTTGCTTCAAGATGGCATGATTGTAGCAATCAAGAAGAGGCGTGGAATAGCGAGTCAGGAGTTTGTTGATGAGGTACGTTATCTCTCATCGATTCACCATCGGAATCTCGTAACTCTTTTAGGCTACTGCCAGGAAAACAATCTGCAGTTTCTTATATACGAATATGTGCCGAATGGAAGTGTCTCCAGTCACTTGTATGGCGCCAATCAACAATCGCGAGAGAAGCTAGAATTCAAGCATAGACTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCCTTGAGCCCCCGTTTGGTGCACAAGGATTTCAAGACGGCGAATGTACTTGTCGATGAAAACTTCATCTCTAAGGTTGCCGACGCAGGACTTCGTAATTTTTTGGGGAGAGTTGAGATTGCAGGACCATCTTCTCTAGTAGCAGTAGATGAGATATTTCTTGCACCCGAGGTGAGAGAATTCAGACGATTTTCGGAAAAGAGCGATGTATACAGCTTTGGGGTATTTTTGCTGGAATTGTTGAGTGGGAAGGAAGCAACAGAATCAGCATCTCTGGACTCTAGCTACAATCTAGTTGAATGGTTAACTTACCCCTTTCCACCATTAGATAGAGTTGTGGGCGATCCGATCCACTTGATTCGGGTCTGA 942 0.4448 MSSSLAAILGGAAGAVALVGIVIILIWFCITHKRSVSRTSETGSSDPSQVGRHGAIELSIRDTRRFEMDELSVATKNFSDKNLIGEGKFGEVYKGLLQDGMIVAIKKRRGIASQEFVDEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGANQQSREKLEFKHRLSIAQGAAKGLAHLHSLSPRLVHKDFKTANVLVDENFISKVADAGLRNFLGRVEIAGPSSLVAVDEIFLAPEVREFRRFSEKSDVYSFGVFLLELLSGKEATESASLDSSYNLVEWLTYPFPPLDRVVGDPIHLIRV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31484g00003 313 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Stsc31484g00003 313 FunFam Protein kinase superfamily protein 43 150 - -
Stsc31484g00003 313 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 293 IPR047117 -
Stsc31484g00003 313 Gene3D Phosphorylase Kinase; domain 1 41 150 - -
Stsc31484g00003 313 SUPERFAMILY Protein kinase-like (PK-like) 59 300 IPR011009 -
Stsc31484g00003 313 Gene3D Transferase(Phosphotransferase) domain 1 151 308 - -
Stsc31484g00003 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Stsc31484g00003 313 Pfam Protein tyrosine and serine/threonine kinase 82 288 IPR001245 GO:0004672|GO:0006468
Stsc31484g00003 313 ProSiteProfiles Protein kinase domain profile. 78 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31484g00003 Stsc-Chr31484 11799 15342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31484g00003 4 297 Receptor kinase-like Gene Family AT5G56890 37.771 9.69e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Stsc31484g00003 PK_Tyr_Ser-Thr 3.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31484g00003 - - gmx:100305436 491.5