Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31481g00005 ATGGCCGGTGCTGGTGCTCCGTTGCCGGTAGCATACCAAGCATGGACGAGTGCAGCAGTACCGGACTGGCTAAACAAAGGGGACAACGCATGGCAGATGGTATCAGCCACCCTGGTGGGGATCCAGAGCATGCCCGGATTAGTCATCTTGTACGGAAGCATAGTCAAGAAGAAATGGGCCGTCAACTCCGCCTTCATGGCCCTATACGCATTCGCAGCCGTTGTCATATGCTGGGTCACTTGGGCCTACAAGATGTCCTTCGGGGACAAGCTCTTGCCCTTCTGGGGCAAAGCTGGGCCCGCCTTGGGCCAGAAGTTCCTCATCAAACAGGCGGGGCTCCCCGCCACGACTCATTACTACCACACTGGGGCTGTGGAGACGCCGGAGATTGAGCCGTATTATCCCATGGCGACGATGGTGTGGTTTCAGTGCGTGTTCGCTGCCATCTCTCTGGTTATCCTGGCAGGGTCGGTGCTTGCTAGGATGAACTTCAAGGCGTGGATGATGTTCGTGCCGTTATGGTTGACTTTCTCGTACACCATAGGTGCGTTCAGCTTGTGGGGTGGTGGATTCTTGTTCCAGTGGGGTGTTATGGACTACTCTGGTGGTTACGTCATCCATCTTTCCTCCGGCGTTGCTGGCTTCGTTGCTGCTTATTGGGTTGGGCCAAGGTCGAAGAAGGACAGGGAGAGGTTCCCACCAAACAACGTGCTTCTAACCCTGACGGGAGCGGGGCTGCTGTGGCTGGGGTGGGCAGGGTTCAACGGAGGGGACCCGTACTCGGCGAACATAGACTCGTCGATGGCGGTTCTGAACACGAACGTGTGCGCGGCCACGAGCCTGTTAGTGTGGACGTGGCTTGATGTGATATTCTTCCACAAGCCCTCCGTTATCGGAGCCGTTCAGGGCATGATCACTGGCCTCGTTTGCATCACTCCCGCCGCAGGTCTGGTTCAAGGATGGGCAGCCATAGTTATGGGAGTTCTATCAGGAAGTGTGCCATGGTACACCATGATGGTATTGGGCAAGAAGTTCGCAGTCTTCCAATCAGTCGACGACACTCTCGCCGTCTTCCACACCCACGCCGTCGCCGGCTTCCTGGGCGGCATCCTCACGGGGCTTTTCGCGGAGCCGCGTCTGAGCGGGCTGTTTCTTGCAGTGACCAACTCTAGAGGAGCGGTGTACGGAGGGTCGGCTGGCGGAGTCCAGATCCTGAAGCAAATTGTTGGGGGATTGTTCGTCATTGGATGGAATGTGGTGGTCACTTCCATAATCTGTGTGGTGGTGAAGTTTGTGGTTCCATTGAGGATGACTGATGAAGAGTTGCTGATTGGTGATGATGCTGTTCATGGAGAAGAAGCTTATGCATTGTGGGGTGATGGAGAGAAACTTAGCCTCTACAAAGATGACACCACCCAACATGGAATGGCTATGGCTTCCAGTGGTGCCACTCAAGTTGTCTAA 1464 0.5553 MAGAGAPLPVAYQAWTSAAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWVTWAYKMSFGDKLLPFWGKAGPALGQKFLIKQAGLPATTHYYHTGAVETPEIEPYYPMATMVWFQCVFAAISLVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGVAGFVAAYWVGPRSKKDRERFPPNNVLLTLTGAGLLWLGWAGFNGGDPYSANIDSSMAVLNTNVCAATSLLVWTWLDVIFFHKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKFAVFQSVDDTLAVFHTHAVAGFLGGILTGLFAEPRLSGLFLAVTNSRGAVYGGSAGGVQILKQIVGGLFVIGWNVVVTSIICVVVKFVVPLRMTDEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTQHGMAMASSGATQVV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31481g00005 487 PANTHER AMMONIUM TRANSPORTER MEP2 15 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc31481g00005 487 ProSitePatterns Ammonium transporters signature. 199 224 IPR018047 GO:0008519|GO:0016020|GO:0072488
Stsc31481g00005 487 NCBIfam ammonium transporter 28 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Stsc31481g00005 487 Gene3D Ammonium transporter AmtB like domains 9 458 IPR029020 -
Stsc31481g00005 487 FunFam Ammonium transporter 11 458 - -
Stsc31481g00005 487 SUPERFAMILY Ammonium transporter 23 437 - -
Stsc31481g00005 487 Pfam Ammonium Transporter Family 30 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31481g00005 Stsc-Chr31481 9613 13208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31481g00005 136 474 Inorganic Solute Cotransporters AT2G38290 69.912 5.96e-165 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31481g00005 K03320 - gmx:100785993 858.596