Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31481g00004 ATGGTGAGCCCGTGTTTCAGTTGGTCTCATGTTACTTGTAGAAACGGACATGTTGTATCTCTGGCCCTGGATTCAATTGGCTTCTCTGGAACACTTTCCCCCTCAATTGTCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAATAACAAACTTCAAGGCACCTTGCCTGATTACATTGCCAACTTGACATCCCTGCAATATCTGAATCTTGCTAACAATAACTTCATTGGCTCTGTACCACCTTCATGGGCTCAACTTTCCACTCTCAAACATTTGGATCTTTCATCAAATGGTCTCACTGGAAGTATCCCCATGCAACTCTTTACTGTTCCAGTGTTCAATTTTTCAAATACACAGCTTCTTTGCGGTTCTAAGTTGGAGCAACCATGTGATTCTAAATCAGACCCTCCAGCTCCTGCAGCTTCCAACAAGAAATTGGAACTTGCAAAGGTAGCACAGTTTGCAAGTTGTGGCGCATTTGCACTTTTGTGTCTTGGTGCAATCTTTACATATAGACACCATCAATTGCACAAACAAAAAAGTGATGTCTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATATCTTTTGGACAACTGAGAAGATTTTCATGGCGAGAACTCCAAGTTGCTACCAAGAACTTCAGTGAAAGCAATGTCATAGGGCAGGGAGGATTTGGAAAAGTCTACAAAGGTGTACTCTCAGATAACACAAAAATCGCCGTGAAACGCCTCACTGATTATCATAATCCCGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCATCTGATAAGTGTTGCAGTTCATAGAAACCTCCTCAGACTAATTGGATTCTGTACAACCTCAACCGAGAGAATCCTTGTATATCCTTTCATGGAAAATTTAAGTGTAGCATATAGACTAAGAGACTTGAAAGCAGATGAGAAAGGTTTGGATTGGGATGCAAGAAAACGTGTGGCTTTTGGTACAGCACACGGTTTGGAGTATCTGCACGAGCAATGCAATCCTAAGATAATACATCGCGATCTGAAGGCAGCAAACATCCTATTAGATGATGAATTCGAAGCAGTTCTTGGTGATTTCGGGCTGGCCAAGCTTGTTGACACAAGAATGACACATGTCACCACTCAAGTTCGCGGCACAATGGGTCATATAGCCCCTGAATACTTGTCCACTGGAAAATCATCGGAAAAGACTGATGTATTTGGATATGGCATCACACTCCTTGAACTAGTCACGGGCCAGCGAGCAGTAGACCTCTCCAGGCTTGAAGAAGAAGAGGATGTTCTCCTAATTGATCATGTAAAGTTATTATAG 1320 0.4205 MVSPCFSWSHVTCRNGHVVSLALDSIGFSGTLSPSIVKLKYLVNLELQNNKLQGTLPDYIANLTSLQYLNLANNNFIGSVPPSWAQLSTLKHLDLSSNGLTGSIPMQLFTVPVFNFSNTQLLCGSKLEQPCDSKSDPPAPAASNKKLELAKVAQFASCGAFALLCLGAIFTYRHHQLHKQKSDVFVDVSGEDESKISFGQLRRFSWRELQVATKNFSESNVIGQGGFGKVYKGVLSDNTKIAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKADEKGLDWDARKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAVDLSRLEEEEDVLLIDHVKLL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31481g00004 439 Gene3D Phosphorylase Kinase; domain 1 185 292 - -
Stsc31481g00004 439 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 434 - -
Stsc31481g00004 439 FunFam Somatic embryogenesis receptor kinase 1 185 292 - -
Stsc31481g00004 439 SUPERFAMILY Protein kinase-like (PK-like) 194 425 IPR011009 -
Stsc31481g00004 439 FunFam Somatic embryogenesis receptor-like kinase 1 293 439 - -
Stsc31481g00004 439 Pfam Protein kinase domain 217 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00004 439 SMART serkin_6 216 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00004 439 FunFam Leucine-rich repeat receptor-like kinase 2 83 - -
Stsc31481g00004 439 Pfam Leucine rich repeat 42 100 IPR001611 GO:0005515
Stsc31481g00004 439 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Stsc31481g00004 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Stsc31481g00004 439 SUPERFAMILY L domain-like 5 112 - -
Stsc31481g00004 439 Gene3D Ribonuclease Inhibitor 2 133 IPR032675 -
Stsc31481g00004 439 Gene3D Transferase(Phosphotransferase) domain 1 293 439 - -
Stsc31481g00004 439 ProSiteProfiles Protein kinase domain profile. 216 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31481g00004 Stsc-Chr31481 3837 6867 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31481g00004 2 439 Receptor kinase-like Gene Family AT5G10290 57.019 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc31481g00004 Pkinase 9.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31481g00004 - - gmx:100800886 753.051