Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31481g00003 ATGTATATGTTTCACATAAATTTGATCCGGGATCCTCTCACAATATTGACAAGGTGGCTGATACTCCTTAGTGTCTTGAAACTCACCTATGCAGTCAAGGATCCTGATATAGAAGGTGATGCTCTGCTTGATCTTTTGAAGAACCTGAATGATTCCAATAATCGAATAAAAGACTGGAATAGTTTTATGGTGAGCCCGTGTTTCAGTTGGTCTCATGTTACTTGTAGAAACGGACATGTTGTATCTCTGGCCCTGGATTCAATTGGCTTCTCTGGAACACTTTCCCCCTCAATTGTCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAATAACAAACTTCAAGGCACCTTGCCTGATTACATTGCCAACTTGACATCCCTGCAATATCTGAATCTTGCTAACAATAACTTCATTGGCTCTGTACCACCTTCATGGGCTCAACTTTCCACTCTCAAACATTTGGATCTTTCATCAAATGGTCTCACTGGAAGTATCCCCATGCAACTCTTTACTGTTCCAGTGTTCAATTTTTCAAATACACAGCTTCTTTGCGGTTCTAAGTTGGAGCAACCATGTGATTCTAAATCAGACCCTCCAGCTCCTGCAGCTTCCAACAAGAAATTGGAACTTGCAAAGGTAGCACAGTTTGCAAGTTGTGGCGCATTTGCACTTTTGTGTCTTGGTGCAATCTTTACATATAGACACCATCAATTGCACAAACAAAAAAGTGATGTCTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATATCTTTTGGACAACTGAGAAGATTTTCATGGCGAGAACTCCAAGTTGCTACCAAGAACTTCAGTGAAAGCAATGTCATAGGGCAGGGAGGATTTGGAAAAGTCTACAAAGGTGTACTCTCAGATAACACAAAAATCGCCGTGAAACGCCTCACTGATTATCATAATCCCGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCATCTGATAAGTGTTGCAGTTCATAGAAACCTCCTCAGACTAATTGGATTCTGTACAACCTCAACCGAGAGAATCCTTGTATATCCTTTCATGGAAAATTTAAGTGTAGCATATAGACTAAGAGACTTGAAAGCAGATGAGAAAGGTTTGGATTGGGATGCAAGAAAACGTGTGGCTTTTGGTACAGCACACGGTTTGGAGTATCTGCACGAGCAATGCAATCCTAAGATAATACATCGCGATCTGAAGGCAGCAAACATCCTATTAGATGATGAATTCGAAGCAGTTCTTGGTGATTTCGGGCTGGCCAAGCTTGTTGACACAAGAATGACACATGTCACCACTCAAGTTCGCGGCACAATGGGTCATATAGCCCCTGAATACTTGTCCACTGGAAAATCATCGGAAAAGACTGATGTATTTGGATATGGCATCACACTCCTTGAACTAGTCACGGGCCAGCGAGCAGTAGACCTCTCCAGGCTTGAAGAAGAAGAGGATGTTCTCCTAATTGATCATGTTAAGAAGCTTCTGAAGGAAAACAGGGTGGAGGACATAGTGGATAGAAACTTGGAGAGTTATGATCCGAAAGAAGTGGAGAGAATTCTTCAGGTAGCATTGTTGTGCACACAATACTACCCTGAAGATCGACCAAGCATGTCAGAGGTTGTGAAAATGCTGCAGGGAGTGGGGTTAGCTGATAGATGGGCAGACTGGAAGCAAGTTGAAGATGCAAGGACTGAAGATTTCTCACTCATGACTCATCAATTTGCTTGGAGTGATGAATCCACCCATGACCAAGAGGCTATTCAGCTTTCCAGGGCAAGATAA 1803 0.4221 MYMFHINLIRDPLTILTRWLILLSVLKLTYAVKDPDIEGDALLDLLKNLNDSNNRIKDWNSFMVSPCFSWSHVTCRNGHVVSLALDSIGFSGTLSPSIVKLKYLVNLELQNNKLQGTLPDYIANLTSLQYLNLANNNFIGSVPPSWAQLSTLKHLDLSSNGLTGSIPMQLFTVPVFNFSNTQLLCGSKLEQPCDSKSDPPAPAASNKKLELAKVAQFASCGAFALLCLGAIFTYRHHQLHKQKSDVFVDVSGEDESKISFGQLRRFSWRELQVATKNFSESNVIGQGGFGKVYKGVLSDNTKIAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKADEKGLDWDARKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAVDLSRLEEEEDVLLIDHVKKLLKENRVEDIVDRNLESYDPKEVERILQVALLCTQYYPEDRPSMSEVVKMLQGVGLADRWADWKQVEDARTEDFSLMTHQFAWSDESTHDQEAIQLSRAR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31481g00003 600 Gene3D Transferase(Phosphotransferase) domain 1 355 571 - -
Stsc31481g00003 600 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Stsc31481g00003 600 SUPERFAMILY Protein kinase-like (PK-like) 256 552 IPR011009 -
Stsc31481g00003 600 FunFam Somatic embryogenesis receptor-like kinase 1 355 571 - -
Stsc31481g00003 600 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Stsc31481g00003 600 FunFam Somatic embryogenesis receptor kinase 1 247 354 - -
Stsc31481g00003 600 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 561 - -
Stsc31481g00003 600 SMART serkin_6 278 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00003 600 Gene3D Phosphorylase Kinase; domain 1 247 354 - -
Stsc31481g00003 600 Pfam Protein kinase domain 279 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00003 600 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Stsc31481g00003 600 FunFam Leucine-rich repeat receptor-like kinase 38 146 - -
Stsc31481g00003 600 SUPERFAMILY L domain-like 40 174 - -
Stsc31481g00003 600 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
Stsc31481g00003 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Stsc31481g00003 600 ProSiteProfiles Protein kinase domain profile. 278 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31481g00003 Stsc-Chr31481 3837 7160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31481g00003 35 600 Receptor kinase-like Gene Family AT5G10290 55.574 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc31481g00003 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31481g00003 - - gmx:100800886 997.653