Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31481g00002 ATGGTGAGCCCGTGTTTCAGTTGGTCTCATGTTACTTGTAGAAACGGACATGTTGTATCTCTGGCCCTGGATTCAATTGGCTTCTCTGGAACACTTTCCCCCTCAATTGTCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAATAACAAACTTCAAGGCACCTTGCCTGATTACATTGCCAACTTGACATCCCTGCAATATCTGAATCTTGCTAACAATAACTTCATTGGCTCTGTACCACCTTCATGGGCTCAACTTTCCACTCTCAAACATTTGGATCTTTCATCAAATGGTCTCACTGGAAGTATCCCCATGCAACTCTTTACTGTTCCAGTGTTCAATTTTTCAAATACACAGCTTCTTTGCGGTTCTAAGTTGGAGCAACCATGTGATTCTAAATCAGACCCTCCAGCTCCTGCAGCTTCCAACAAGAAATTGGAACTTGCAAAGGTAGCACAGTTTGCAAGTTGTGGCGCATTTGCACTTTTGTGTCTTGGTGCAATCTTTACATATAGACACCATCAATTGCACAAACAAAAAAGTGATGTCTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATATCTTTTGGACAACTGAGAAGATTTTCATGGCGAGAACTCCAAGTTGCTACCAAGAACTTCAGTGAAAGCAATGTCATAGGGCAGGGAGGATTTGGAAAAGTCTACAAAGGTGTACTCTCAGATAACACAAAAATCGCCGTGAAACGCCTCACTGATTATCATAATCCCGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCATCTGATAAGTGTTGCAGTTCATAGAAACCTCCTCAGACTAATTGGATTCTGTACAACCTCAACCGAGAGAATCCTTGTATATCCTTTCATGGAAAATTTAAGTGTAGCATATAGACTAAGAGACTTGAAAGCAGATGAGAAAGGTTTGGATTGGGATGCAAGAAAACGTGTGGCTTTTGGTACAGCACACGGTTTGGAGTATCTGCACGAGCAATGCAATCCTAAGATAATACATCGCGATCTGAAGGCAGCAAACATCCTATTAGATGATGAATTCGAAGCAGTTCTTGGTGATTTCGGGCTGGCCAAGCTTGTTGACACAAGAATGACACATGTCACCACTCAAGTTCGCGGCACAATGGGTCATATAGCCCCTGAATACTTGTCCACTGGAAAATCATCGGAAAAGACTGATGTATTTGGATATGGCATCACACTCCTTGAACTAGTCACGGGCCAGCGAGCAGTAGACCTCTCCAGGCTTGAAGAAGAAGAGGATGTTCTCCTAATTGATCATGTTAAGAAGCTTCTGAAGGAAAACAGGGTGGAGGACATAGTGGATAGAAACTTGGAGAGTTATGATCCGAAAGAAGTGGAGAGAATTCTTCAGGTAGCATTGTTGTGCACACAATACTACCCTGAAGATCGACCAAGCATGTCAGAGGTTGTGAAAATGCTGCAGGGAGTGGGGTTAGCTGATAGATGGGCAGACTGGAAGCAAGTTGAAGATGCAAGGACTGAAGATTTCTCACTCATGACTCATCAATTTGCTTGGAGTGATGAATCCACCCATGACCAAGAGGCTATTCAGCTTTCCAGGGCAAGATAA 1617 0.428 MVSPCFSWSHVTCRNGHVVSLALDSIGFSGTLSPSIVKLKYLVNLELQNNKLQGTLPDYIANLTSLQYLNLANNNFIGSVPPSWAQLSTLKHLDLSSNGLTGSIPMQLFTVPVFNFSNTQLLCGSKLEQPCDSKSDPPAPAASNKKLELAKVAQFASCGAFALLCLGAIFTYRHHQLHKQKSDVFVDVSGEDESKISFGQLRRFSWRELQVATKNFSESNVIGQGGFGKVYKGVLSDNTKIAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKADEKGLDWDARKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAVDLSRLEEEEDVLLIDHVKKLLKENRVEDIVDRNLESYDPKEVERILQVALLCTQYYPEDRPSMSEVVKMLQGVGLADRWADWKQVEDARTEDFSLMTHQFAWSDESTHDQEAIQLSRAR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31481g00002 538 FunFam Somatic embryogenesis receptor-like kinase 1 293 509 - -
Stsc31481g00002 538 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 499 - -
Stsc31481g00002 538 SUPERFAMILY Protein kinase-like (PK-like) 194 490 IPR011009 -
Stsc31481g00002 538 FunFam Somatic embryogenesis receptor kinase 1 185 292 - -
Stsc31481g00002 538 SMART serkin_6 216 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00002 538 Pfam Protein kinase domain 217 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00002 538 Pfam Leucine rich repeat 42 100 IPR001611 GO:0005515
Stsc31481g00002 538 Gene3D Transferase(Phosphotransferase) domain 1 293 509 - -
Stsc31481g00002 538 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Stsc31481g00002 538 Gene3D Phosphorylase Kinase; domain 1 185 292 - -
Stsc31481g00002 538 FunFam Leucine-rich repeat receptor-like kinase 2 83 - -
Stsc31481g00002 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Stsc31481g00002 538 SUPERFAMILY L domain-like 5 112 - -
Stsc31481g00002 538 Gene3D Ribonuclease Inhibitor 2 133 IPR032675 -
Stsc31481g00002 538 ProSiteProfiles Protein kinase domain profile. 216 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31481g00002 Stsc-Chr31481 3837 7160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31481g00002 2 538 Receptor kinase-like Gene Family AT5G10290 56.306 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc31481g00002 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31481g00002 - - gmx:100800886 927.161