Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31481g00001 ATGCATACCATATTGCTTGAGAATTTTCATTTGCTACTTTTGTTTACATTCGAAGGTGATGCTCTGCTTGATCTTTTGAAGAACCTGAATGATTCCAATAATCGAATAAAAGACTGGAATAGTTTTATGGTGAGCCCGTGTTTCAGTTGGTCTCATGTTACTTGTAGAAACGGACATGTTGTATCTCTGGCCCTGGATTCAATTGGCTTCTCTGGAACACTTTCCCCCTCAATTGTCAAATTGAAATATTTGGTTAACTTGGAATTGCAGAATAACAAACTTCAAGGCACCTTGCCTGATTACATTGCCAACTTGACATCCCTGCAATATCTGAATCTTGCTAACAATAACTTCATTGGCTCTGTACCACCTTCATGGGCTCAACTTTCCACTCTCAAACATTTGGATCTTTCATCAAATGGTCTCACTGGAAGTATCCCCATGCAACTCTTTACTGTTCCAGTGTTCAATTTTTCAAATACACAGCTTCTTTGCGGTTCTAAGTTGGAGCAACCATGTGATTCTAAATCAGACCCTCCAGCTCCTGCAGCTTCCAACAAGAAATTGGAACTTGCAAAGGTAGCACAGTTTGCAAGTTGTGGCGCATTTGCACTTTTGTGTCTTGGTGCAATCTTTACATATAGACACCATCAATTGCACAAACAAAAAAGTGATGTCTTTGTTGATGTTTCAGGTGAAGATGAGAGCAAAATATCTTTTGGACAACTGAGAAGATTTTCATGGCGAGAACTCCAAGTTGCTACCAAGAACTTCAGTGAAAGCAATGTCATAGGGCAGGGAGGATTTGGAAAAGTCTACAAAGGTGTACTCTCAGATAACACAAAAATCGCCGTGAAACGCCTCACTGATTATCATAATCCCGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCATCTGATAAGTGTTGCAGTTCATAGAAACCTCCTCAGACTAATTGGATTCTGTACAACCTCAACCGAGAGAATCCTTGTATATCCTTTCATGGAAAATTTAAGTGTAGCATATAGACTAAGAGACTTGAAAGCAGATGAGAAAGGTTTGGATTGGGATGCAAGAAAACGTGTGGCTTTTGGTACAGCACACGGTTTGGAGTATCTGCACGAGCAATGCAATCCTAAGATAATACATCGCGATCTGAAGGCAGCAAACATCCTATTAGATGATGAATTCGAAGCAGTTCTTGGTGATTTCGGGCTGGCCAAGCTTGTTGACACAAGAATGACACATGTCACCACTCAAGTTCGCGGCACAATGGGTCATATAGCCCCTGAATACTTGTCCACTGGAAAATCATCGGAAAAGACTGATGTATTTGGATATGGCATCACACTCCTTGAACTAGTCACGGGCCAGCGAGCAGTAGACCTCTCCAGGCTTGAAGAAGAAGAGGATGTTCTCCTAATTGATCATGTTAAGAAGCTTCTGAAGGAAAACAGGGTGGAGGACATAGTGGATAGAAACTTGGAGAGTTATGATCCGAAAGAAGTGGAGAGAATTCTTCAGGTAGCATTGTTGTGCACACAATACTACCCTGAAGATCGACCAAGCATGTCAGAGGTTGTGAAAATGCTGCAGGGAGTGGGGTTAGCTGATAGATGGGCAGACTGGAAGCAAGTTGAAGATGCAAGGACTGAAGATTTCTCACTCATGACTCATCAATTTGCTTGGAGTGATGAATCCACCCATGACCAAGAGGCTATTCAGCTTTCCAGGGCAAGATAA 1743 0.4205 MHTILLENFHLLLLFTFEGDALLDLLKNLNDSNNRIKDWNSFMVSPCFSWSHVTCRNGHVVSLALDSIGFSGTLSPSIVKLKYLVNLELQNNKLQGTLPDYIANLTSLQYLNLANNNFIGSVPPSWAQLSTLKHLDLSSNGLTGSIPMQLFTVPVFNFSNTQLLCGSKLEQPCDSKSDPPAPAASNKKLELAKVAQFASCGAFALLCLGAIFTYRHHQLHKQKSDVFVDVSGEDESKISFGQLRRFSWRELQVATKNFSESNVIGQGGFGKVYKGVLSDNTKIAVKRLTDYHNPGGEAAFEREVHLISVAVHRNLLRLIGFCTTSTERILVYPFMENLSVAYRLRDLKADEKGLDWDARKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDTRMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAVDLSRLEEEEDVLLIDHVKKLLKENRVEDIVDRNLESYDPKEVERILQVALLCTQYYPEDRPSMSEVVKMLQGVGLADRWADWKQVEDARTEDFSLMTHQFAWSDESTHDQEAIQLSRAR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31481g00001 580 ProSiteProfiles Protein kinase domain profile. 258 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00001 580 Pfam Protein kinase domain 259 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00001 580 Gene3D Phosphorylase Kinase; domain 1 227 334 - -
Stsc31481g00001 580 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
Stsc31481g00001 580 FunFam Leucine-rich repeat receptor-like kinase 18 126 - -
Stsc31481g00001 580 FunFam Somatic embryogenesis receptor kinase 1 227 334 - -
Stsc31481g00001 580 Pfam Leucine rich repeat 84 142 IPR001611 GO:0005515
Stsc31481g00001 580 Gene3D Transferase(Phosphotransferase) domain 1 335 551 - -
Stsc31481g00001 580 SUPERFAMILY Protein kinase-like (PK-like) 236 532 IPR011009 -
Stsc31481g00001 580 Pfam Leucine rich repeat N-terminal domain 18 55 IPR013210 -
Stsc31481g00001 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Stsc31481g00001 580 SMART serkin_6 258 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31481g00001 580 SUPERFAMILY L domain-like 19 154 - -
Stsc31481g00001 580 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 541 - -
Stsc31481g00001 580 FunFam Somatic embryogenesis receptor-like kinase 1 335 551 - -
Stsc31481g00001 580 Gene3D Ribonuclease Inhibitor 16 188 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31481g00001 Stsc-Chr31481 3837 7160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31481g00001 18 580 Receptor kinase-like Gene Family AT5G10290 55.518 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc31481g00001 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31481g00001 - - gmx:100800886 953.74