Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31479g00001 ATGGCGGCAATCACCCTGGAGGAGATCAAGAACGAGACTGTCGATTTGGAGCGAATTCCTATTGATGAAGTGTTCCAGCAACTGAAATGTTCGAGAGAAGGTTTGTCAGGGGCGGAAGGAGACAATCGGCTTCAGATATTTGGCCCAAACAAACTAGAAGAGAAGAAGGAAAGCAAACTCCTCAAGTTTCTCGGGTTCATGTGGAATCCCCTGTCATGGGTCATGGAAGCTGCAGCTATCATGGCTATTGCACTTGCAAATGGTGATGGAAAGCCTCCGGATTGGCAAGATTTCGTTGGTATCGTTTGTTTGTTGTTTATCAACTCCACCATCAGTTTCATTGAAGAAAACAATGCTGGAAATGCTGCTGCGGCTCTTATGGCTGGTCTTGCTCCCAAGACTAAGGTTCTTAGAGATGGAAAATGGTCTGAGCAAGAAGCAGCAATTCTGGTCCCTGGAGACATCATTAGCATCAAACTAGGTGATATCGTTCCTGCTGATGCTCGTCTTCTTGAGGGTGATCCTTTAAAGATTGATCAATCTGCTCTTACCGGAGAGTCCCTTCCGGTCACCAAGAGTCCAGGGGATGAAGTCTTCTCTGGCTCAACTTGTAAACAAGGTGAAATTGAAGCCGTCGTCATTGCAACCGGTGTCCACACATTCTTCGGCAAGGCGGCTCATCTCGTGGATAGCACCAACCAAGTTGGACATTTCCAGAAGGTTCTCACAGCAATTGGAAATTTCTGCATTTGTTCCATTGCTGTTGGTATGGTGGCTGAGATCATAGTCATGTACCCTGTTCAGCACCGCAAATATAGAGATGGAATTGACAACCTGTTGGTCCTCTTGATTGGTGGAATCCCCATTGCTATGCCCACTGTGTTGTCTGTCACAATGGCCATTGGCTCTCACAGGCTCTCTCAGCAGGGTGCTATCACCAAGCGTATGACCGCCATTGAAGAAATGGCCGGCATGGATGTCCTCTGCAGTGACAAGACTGGGACACTCACCCTGAACAAGCTGAGTGTTGACAGGAACTTGATTGAAGTCTTTGCCAAGGGTGTGGACAAGGAACATGTTATCCTTCTTGCTGCAAGGGCTTCCAGGACTGAAAACCAGGATGCAATAGATGCTGCCATCGTTGGAATGCTTGCTGATCCAAAAGAGGCAAGGGCTGGGGTAAGAGAGGTTCACTTCTTGCCATTCAATCCAGTTGACAAGAGAACAGCTTTGACTTACATTGATTCTGAAGGAAATTGGCACAGGGCAAGCAAAGGTGCTCCTGAGCAGATCATTGCCTTGTGTAACCTTAGGGAAGATGCTAAGAAAAAGTGCCATGCTATTATTGACAAGTTCGCAGACAGAGGGCTCCGTTCCCTCGCTGTTGCTAGACAGGAAGTTCCAGAGAAAACAAAGGAAAGTGCCGGTGGTCCATGGCAGTTTGTTGGTTTGTTGCCACTGTTTGATCCCCCAAGACATGACAGTGCTGAGACTATCCGACAAGCTCTTAACCTTGGCGTAAATGTCAAGATGATTACGGGTGATCAACTTGCCATTGCTAAGGAGACCGGACGGAGACTTGGGATGGGAACAAATATGTATCCATCTGCTTCCTTACTTGGTCAAGACAAGGATGCAAGTATTGCTGCACTTCCAGTGGAAGAGCTTATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCAGAACACAAATATGAAATTGTCAGGAAGTTACAAGAGAGGAAGCACATTTGTGGAATGACCGGAGACGGTGTAAATGATGCTCCTGCCTTAAAGAAGGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCGGCAAGAAGTGCTTCTGACATTGTCTTGACTGAGCCAGGATTGAGTGTTATTATTAGTGCTGTCTTAACCAGCAGAGCTATTTTCCAAAGAATGAAGAACTATACGATCTATGCAGTATCTATCACCATCCGTATAGTGTTTGGCTTCATGTTCATTGCACTAATCTGGAAATTCGACTTTTCACCTTTCATGGTTTTGATCATTGCTATTCTAAATGATGGAACAATCATGACAATTTCGAAGGACCGTGTGAAGCCATCTCCCTTGCCCGACAGCTGGAAACTGCGAGAAATATTCGCCACTGGGACTGTTCTTGGAAGTTACTTGGCACTGATGACTGTCATATTCTTCTGGGCAATGAAGGAAACTAGCTTCTTCCCTGACAAATTTGGAGTTAGACACCTGAATCATGATGAAATGATGTCTGCTCTGTATCTACAAGTTAGTATTGTTAGCCAGGCTTTGATCTTTGTGACTCGTTCACGCAGCTGGTCCTTCGTTGAACGCCCCGGATTGTTATTGGTCACTGCTTTTGTTATTGCTCAGCTGATTGCTACAATCATAGCAGTATATGCCGACTGGGGCTTTGCAAAGGTGAAAGGAATTGGTTGGGGTTGGGCTGGAGTCATCTGGCTCTACAGTGTTGTCTTCTATATTCCTCTTGACCTAATGAAGTTCGCCATCCGCTACATCTTGAGTGGCAAGGCCTGGGTAAATCTGCTAGAAAACAAGACTGCCTTCACCACCAAGAAAGACTATGGTAAGGAAGAGAGGGAAGCTCAGTGGGCTCTTGCTCAGAGGACTCTGCATGGTCTTCAACCACCGGAAACTTCTAGTATCTTTAATGAAAAGAGTAGTTACAGGGAACTCTCTGAGATTGCAGAACAAGCCAAGAGAAGAGCCGAAGTTGCAAGGCTTCGTGAGCTTAACACACTAAAGGGACATGTTGAATCAGTGGTGAAGCTAAAAGGTTTGGACATTGATACAATCCAACAGCACTACACTGTGTGA 2850 0.4589 MAAITLEEIKNETVDLERIPIDEVFQQLKCSREGLSGAEGDNRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGDGKPPDWQDFVGIVCLLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKSPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVAEIIVMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVDKEHVILLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSEGNWHRASKGAPEQIIALCNLREDAKKKCHAIIDKFADRGLRSLAVARQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIAALPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGTVLGSYLALMTVIFFWAMKETSFFPDKFGVRHLNHDEMMSALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVTAFVIAQLIATIIAVYADWGFAKVKGIGWGWAGVIWLYSVVFYIPLDLMKFAIRYILSGKAWVNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETSSIFNEKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31479g00001 949 Gene3D - 898 949 - -
Stsc31479g00001 949 NCBIfam HAD-IC family P-type ATPase 101 348 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 NCBIfam HAD-IC family P-type ATPase 563 677 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 SFLD p-type atpase 311 639 IPR044492 -
Stsc31479g00001 949 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 845 IPR023298 -
Stsc31479g00001 949 Gene3D - 326 625 IPR023214 -
Stsc31479g00001 949 PANTHER CALCIUM-TRANSPORTING ATPASE 17 881 - -
Stsc31479g00001 949 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 804 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc31479g00001 949 SUPERFAMILY HAD-like 325 635 IPR036412 -
Stsc31479g00001 949 Coils Coil 900 920 - -
Stsc31479g00001 949 CDD P-type_ATPase_H 34 839 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc31479g00001 949 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Stsc31479g00001 949 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Stsc31479g00001 949 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Stsc31479g00001 949 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Stsc31479g00001 949 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Stsc31479g00001 949 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Stsc31479g00001 949 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 PRINTS H+-transporting ATPase (proton pump) signature 758 779 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc31479g00001 949 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Stsc31479g00001 949 Pfam E1-E2 ATPase 131 308 - -
Stsc31479g00001 949 Gene3D - 132 216 - -
Stsc31479g00001 949 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Stsc31479g00001 949 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Stsc31479g00001 949 FunFam Plasma membrane ATPase 481 636 - -
Stsc31479g00001 949 FunFam Plasma membrane ATPase 341 488 - -
Stsc31479g00001 949 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Stsc31479g00001 949 SFLD Haloacid Dehalogenase 311 639 - -
Stsc31479g00001 949 FunFam Plasma membrane ATPase 132 216 - -
Stsc31479g00001 949 FunFam ATPase 4 plasma membrane-type 573 813 - -
Stsc31479g00001 949 Gene3D - 94 813 - -
Stsc31479g00001 949 Gene3D - 341 488 IPR023299 GO:0000166
Stsc31479g00001 949 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31479g00001 Stsc-Chr31479 2693 8620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31479g00001 5 949 Primary Pumps ATPases AT4G30190 84.082 0.0 1637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31479g00001 K01535 - gmx:100816905 1738.01