Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31466g00002 ATGAAACCTGCCAAGATGGAGATATTGTTGGTTCTGTTATTGGCGTTGCTTCTATCTTGCGGAAACAGTTACAGCTGGGTAACAGATTCTGTTACGTGTCCCACTCACTGGTGCGGAAGCCATAACATAAGCTACCCTTTCACACTAACAAACACTACAAATTGCGGTGATCCCACCTTCAACAACTCCCTCTCTTGCGAGAATCATAACCAATTGTTTGTTTACTTCAAATCACGAAAATTCTCTGTTGTATCCATTAACTACAACAACTCCACAATCCGATTAGTAGACGCCGCCATTGTTAATAACTCTTCCTTATTATTATTCCCTTCTTATTCCCTGGCTTCCTACAATTTCACTCCTTACCAATCATATCATCATAAGCAGATTCTATATCTGACGTGTCCAGACACGGTGGAATCTGAAGTTGCTGATGACTCTGCTGCAGCTTGCATCAACGGTTCTTATGCGCGTGGAAGAAGTAGCTTCTTCTATGTGTGCGATGGTAACATGACTCTGCGAGATTTGGGGCTGCAAGATTCGTGTCGCATAGAGTGGATGTATCCAAGTTCATGGCCGGGTGAAATCAATCACAACGACGCAAACACCTCTTGCTCAGACATCCGTACAATGCTGCTTTACGGGTTTGAAATTCCATGGGCTGTGTGTTTTTGCCAAGAAGCTGTGTTTGATGATCAAAACACCAGCCTTCATTGTTTAACTCAAAAGTCACGCACTTTAGTTTTCTTGGTTGGCAAGTTCATGCTTGGAGTTGCATTTGTCATTTTATGCGAATGGAGACAGAAGAATTTAGGCACTTACTATACCATTGAAGATTTTCTGCGAAATAACAATGAAATCTTGCCAATTAGATACTCTTACAAAGACATCAAGAACATTACCAAAGGATTCAAAACAAAATTGGGGAATGGAGGCTATGGCTCTGTCTTTCAAGGAAAACTTCCAAGTGGTCGTCATGTAGCTGTTAAAGTTTTGAATAATAACAATAACACAAGATCTAGTAATGAAGAGGAATTTATCAGTGAAGTTGCAACTATTGGTAGAATTTACCATGCCAATGTAGTGCAACTCATTGGTTTCTGTGTGGAAGGACTAACACGTGCTCTCATATATGAGTTAATGGAAAATGGGTCTCTAGAAAAACACATATTTTCACATGATGAAGAAAGCATTTCCTTAACTTGTGACCAATTGTACAGAATTTCTCTTGGAGTGGCACGAGGCATTGAGTACATGCATAATGGTTGTGACATGAAGATTCTGCACTTTGATATCAAGCCTCAGAACATTCTTCTTGATGAGAATTTCAATCCGAAAGTCTCTGATTTCGGACTTGCGAAGCTGTGTCCGAATGAGAGCAAAGTGTCTTTGTCTGCAGCAAGAGGAACCATAGGATACATGGCTCCTGAACTTTTCTATAGAAACATTGGCACAATCTCCGACAAAGTTGATGTCTATAGTTTTGGAATGTTATTGATGGAGATGGCAAGTAGAAAGAAGAATCTTAATACAATGGCTCAAAATTCTAGCCAGGTTTATTTTCCTTTTTGGGTTTACAATCAATTACATGATGGAAGTGAAATTGTAATTGAAAATGACACAGATGAGGAGATGAAGTTGGCAAAGAAAATGATGATTGTGGCATTGTGGTGTATACAAAGCAAGCCTAATGATAGGCCTTCAATGAAGAGAGTGTTGGAGATGCTAGAACAAGATGATGATGAAGAATTGGAAATGCCTCCTAAGCCTTACATATGTTCACATGACATACCTGCACAAGATGTTGGAGATTGTAGTACTTCAGTGCTATTTTCTGATATATCATCATTTAGTGATTCTAAAAAAATTGTAGATTCCCCTTAG 1884 0.3928 MKPAKMEILLVLLLALLLSCGNSYSWVTDSVTCPTHWCGSHNISYPFTLTNTTNCGDPTFNNSLSCENHNQLFVYFKSRKFSVVSINYNNSTIRLVDAAIVNNSSLLLFPSYSLASYNFTPYQSYHHKQILYLTCPDTVESEVADDSAAACINGSYARGRSSFFYVCDGNMTLRDLGLQDSCRIEWMYPSSWPGEINHNDANTSCSDIRTMLLYGFEIPWAVCFCQEAVFDDQNTSLHCLTQKSRTLVFLVGKFMLGVAFVILCEWRQKNLGTYYTIEDFLRNNNEILPIRYSYKDIKNITKGFKTKLGNGGYGSVFQGKLPSGRHVAVKVLNNNNNTRSSNEEEFISEVATIGRIYHANVVQLIGFCVEGLTRALIYELMENGSLEKHIFSHDEESISLTCDQLYRISLGVARGIEYMHNGCDMKILHFDIKPQNILLDENFNPKVSDFGLAKLCPNESKVSLSAARGTIGYMAPELFYRNIGTISDKVDVYSFGMLLMEMASRKKNLNTMAQNSSQVYFPFWVYNQLHDGSEIVIENDTDEEMKLAKKMMIVALWCIQSKPNDRPSMKRVLEMLEQDDDEELEMPPKPYICSHDIPAQDVGDCSTSVLFSDISSFSDSKKIVDSP 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31466g00002 627 Gene3D Transferase(Phosphotransferase) domain 1 381 586 - -
Stsc31466g00002 627 PANTHER RUST RESISTANCE KINASE LR10-RELATED 276 597 IPR045874 GO:0004672
Stsc31466g00002 627 Gene3D Phosphorylase Kinase; domain 1 281 380 - -
Stsc31466g00002 627 ProSiteProfiles Protein kinase domain profile. 302 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31466g00002 627 FunFam PR5-like receptor kinase 381 588 - -
Stsc31466g00002 627 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31466g00002 627 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Stsc31466g00002 627 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Stsc31466g00002 627 SMART serkin_6 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31466g00002 627 SUPERFAMILY Protein kinase-like (PK-like) 285 577 IPR011009 -
Stsc31466g00002 627 Pfam Wall-associated receptor kinase galacturonan-binding 33 97 IPR025287 GO:0030247
Stsc31466g00002 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Stsc31466g00002 627 FunFam serine/threonine-protein kinase PBS1-like 276 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31466g00002 Stsc-Chr31466 1303 4362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31466g00002 34 592 Receptor kinase-like Gene Family AT5G38260 37.925 6.45e-108 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc31466g00002 Pkinase 5.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31466g00002 - - adu:107460529 978.008