Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31412g00001 ATGATGGTGCATGCTAGATGCTATGGAGAACTGGAATCTGTTAATGGAGTGCTATGGTTGTGCAACTTATGTCGATCGGGTGATCCTCCACCACCTTGTTGCTTATGCCCACTAATAGGAGGAGCAATGAAGCCTACAACAGATGGCCGATGGGCACATTTGGCTTGTGCGATGTGGATACCTGAGACTTGCTTAGCTGATGTCAAAAGGATGGAACCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGTAGCATATGCGGTGTATCTTATGGTGCTTGCATCCAATGTTCAAACAATTCTTGCCGAGTAGCATATCATCCACTTTGTGCTCGTGCTGCTGGTCTTTGTGTTGAGCTTGAGAACGAGGACAGGCTTTACCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGACTGCTTTCTTTTTGCAAGAAACATAGGCAGCCATCTAATGAACATTCTGTTGCCAATGAACGTATTGTTCGAGCTGCGGGTCCATGTTCTGACTATGAACCACCACTCAACCCGTCTGGTTGTGCTCGAAGTGAGCCATATGATTATTTTGGCAGGAGAGGACGGAAAGAACCTGAAGTACTTGCAGCTGCATCTTCAAAACGCTTGTTTGTTGAGAACCAACCATATTTAGTAGGTGGATACTGCCAACATGGGTTGTCTAATGACCCAGAACCTTCTGGCAGAGGAGTCTGCCCTCAAGTACATAGGCTGAGGACCTCTTTGGGTGATGATTCGGATGACATACTTTCTATTTCAGAGAAATATAAGTTCATGAGGAAAAATTTTTGCAAACGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATATTTGCAAAGCATCCATACAAAGGTGGAGACATGGTGATTGAGTACACTGGTGAGCTTGTTAGGCCTTCCATAGCTGACCGGAGAGAGCGCTTTATATACAATTCTTTGGTGGGTGCTGGAACATACATGTTCCGGATTAATGATGAACGAGTCATTGATGCCACTAGAGCAGGAAGTATAGCTCATTTAATCAATCATTCTTGTGCACCGAATTGCTATTCACGAGTTATTAATGTTAATGATTTTTTTCAATTGACGAGCGGCTTTCTTGTTACTGTGGTTTCCCAAAATGCCGAGATTGGAAAGGAGAATGAGATTCTTAAATCTTTATGCACAGAAGTTGTAAGATCTACCTGGATCTTTTTTTATCCAACAACTTTTGCCATGGATTCTATGAGTTCCGCGGATGGCATTGTTGTACATATCCCATTGGTTTTGCCATGA 1314 0.4285 MMVHARCYGELESVNGVLWLCNLCRSGDPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVANERIVRAAGPCSDYEPPLNPSGCARSEPYDYFGRRGRKEPEVLAAASSKRLFVENQPYLVGGYCQHGLSNDPEPSGRGVCPQVHRLRTSLGDDSDDILSISEKYKFMRKNFCKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYMFRINDERVIDATRAGSIAHLINHSCAPNCYSRVINVNDFFQLTSGFLVTVVSQNAEIGKENEILKSLCTEVVRSTWIFFYPTTFAMDSMSSADGIVVHIPLVLP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31412g00001 437 Gene3D SET domain 245 396 IPR046341 -
Stsc31412g00001 437 SMART set_7 276 395 IPR001214 GO:0005515
Stsc31412g00001 437 SUPERFAMILY SET domain 270 372 IPR046341 -
Stsc31412g00001 437 ProSiteProfiles SET domain profile. 276 401 IPR001214 GO:0005515
Stsc31412g00001 437 Pfam PHD-zinc-finger like domain 32 153 - -
Stsc31412g00001 437 CDD ePHD_ATX1_2_like 39 153 IPR041956 -
Stsc31412g00001 437 ProSiteProfiles Extended PHD (ePHD) domain profile. 30 154 IPR034732 -
Stsc31412g00001 437 Pfam SET domain 287 375 IPR001214 GO:0005515
Stsc31412g00001 437 FunFam Histone-lysine N-methyltransferase 28 156 - -
Stsc31412g00001 437 PANTHER PHD FINGER PROTEINS 1 370 - -
Stsc31412g00001 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 156 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31412g00001 Stsc-Chr31412 254 4079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31412g00001 1 124 C2H2 Transcription Factor Family AT3G14740 41.085 2.62e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc31412g00001 zf-HC5HC2H_2 7.2e-34 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31412g00001 - - gmx:100806736 689.493