Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31399g00001 ATGGAGGAAGAGCAGGATCGAATTCTGCTCAACAGTTTGGGCGTTAAGTCGGCAAATCCAGAAGACATTGAACGCCACATCTTAGAGAAGGCGATTACTGTTCCTGAAGCTGAAGGGAGTGTGAAGGAAAAAGATTCTAGTGTATCTGGAAATGTTGATCCATTATCTGCTACTAAAGCGGAGCTTAATCAGAAACTAAGGGCAGTGAGATTTGAAATAGATGCAGTAGCTTCTACGATTCAGCAATGGAGAAGTGATGAGAATGATGGAGAATGTGGTTGCATTGGCGGGGACAGCCAGGAGGAAGGAGTTGCTGAAGGTAGTTCCTCAAACGATTCAAACCTTCAGTGTGCTCTTGCTGCTGATAGGCTACAGAGCCTGAAGAAAACAAAGGCTAAACTAGAGGAAGAGCTTTCGGAGTTGTGTAAGGATGATGTTTCCAAAAAAAATGACGAGGAAAAATTGATATTTGATTTAGTTAAGCAAGAGAGAAGACCAAAGAAGAAATTAAAAAAAGAAGATGAAAAGCCACAGAAAAGCTCGGGGAAGCGGCAAAGAATAGTCTCTTTTAATGATGATGCTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGTTTTGTTGAAACAGAGAGGGATGAGTTAGTGAGAAAAGGGGTTCTAACCCCTTTTCACAAGTTGAAGGGCTTTGAGCGCCGCTTTCAACAATCTACAGCATCAAGTAGTCATAATGCATCTGAGCAAGAAAATACTGGCGATCTTGCTTCTGCAAGTATTGAAAGAGCCGCTAGATCAATATCCGAGGCAGCAAGAGCTCGCCCAACCTCCAAGCTGCTTGAATATGATGCTGTTCCAAAGCTTGATGCCCCCACTTTTCCATTTCAAAGGCTCAGGAAACCACTTAAATTACGAGATAAAGAGGAAGAGGATAATAACGATTCCAAGAGGAAAAGGAGGCGGCCTTTGCCTGGTAGGAAATGGACGAGACGTGTTTCATGTGAGGATATGCAACATGGAGATAGTGAAAATGCAAATGGTTACTTGGATACTTCCAGTTGTCAAAATTTGGATGCACAAGGTGTTGAACGTGTTGATCATGAATCTTCTTATTTAACATTAGAAGGTGGGCTAAAAATACCTGAAAACATCTTTGATGCTCTGTTTGACTATCAGAAGGTTGGTGTTCAATGGATGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGCCTCGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTGGGATGTACAAGCCCAGCATTATTATCTGTCCTGTTACACTCTTGAGACAGTGGAAAAGGGAAGCAAAAAAGTGGTACCCTAAATTTCATGTAGAGCTTTTACATGATTCTGTTCAGGATTCTGCTCCTAGAAAGAAGCAAGCAAATTCTGATGAATCAGATTATGAGAGTGATATTTCAAATGACGATGATGATGAAAGAAGTTTACCATCTAGAAACACAAGAAAGTGGGAACCCCTGATAAATCGTGTTTTGAGATCAGAATCTGGATTACTTATCACAACTTATGAGCAAATCAGAATATTGGGGGACCAGTTGCTTGACATCGAATGGGGGTATGCTGTTCTTGATGAAGGACATAGAATAAGAAATCCTAATGCTGAAGTCACCCTTGTTTGTAAACAGCTACAAACTGTGCACCGCATCATAATGACTGGTGCACCTATTCAGAACAAGCTGTCAGAACTCTGGTCATTGTTTGATTTTGTTTTTCCTGGGAAATTAGGTGTGCTGCCTGTATTTGAAGCCGAATTTGCAGTTCCTATTGCTGTTGGTGGTTATGCAAATGCTTCACCATTACAAGTATCTACAGCATACAGGTGTGCCGTGGTGCTGCGGGATTTGATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTGAATGCTCAGCTTCCAAACAAAACTGAGCACGTCCTATTCTGCAGCCTCACATCAGAGCAAATATCTGCTTATAGAGCATTTTTAGCAAGTTCGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCTCTTTCTGGAATTGATGTGATGCGTAAGATCTGCAATCACCCTGACCTACTTGAAAGAGATCATGCCTCAAGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAGGTTGTAGCTCAAGTGCTCAATGTTTGGAAAGAGCAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAGCAAATGCTTGACATTTTTGAGAATTTTTTAACAACTTCTGGTCATATTTATAGGAGAATGGATGGTCTCACTCCCGTAAAACAGAGAATGGCTTTAATAGACGAATTCAATGCCTCAAGTGATATATTTGTTTTTATTCTAACAACAAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAAACAGGGTGATAATCTTTGACCCTGATTGGAATCCTTCAAATGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGATGTAACAGTTTATAGGTTGATCACACGGGGAACCATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAAATACTTAAGAACCCGCAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTTACGTTGAATGTCGATGAAGAAAATGGGTCGACTGAAACATCAAATATTTTCGGTCAAATATCCGAAGAACTAAATGTGGTTGGGACACACACAAACAACCAGGAGAATCATAAACTTACCGAGACTACTGAACTGGTTTCTGAAGATGTTGCACCTGATAATGATGACCAATCACAGAGTGGATCTCCGAGTGGAAAGGGGAAAGGGAAAACTGAACGTGGTGATGGGGTTGATGAGGAAACAAATATATTGAAGAGTCTTTTTGGTGCCAATGGGGTACATAGTGCCTTGAACCATGATATGATCGTGAATGCCAATGATGAGGAGAAACTGAGGCTTCAGGAGGAAGCATCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAATCACGAATGCTCCGAAGTCATGACAGCGTCTCTGTTCCTACATGGACGGGAAGGTCTGGAGCTGCTGGTGCACCAGCATCTGTTAAGCGGAAATTTGGTTCAACTGTGAATACCCAGTTGATAAATAATAGCAAAGCATCGGATGGATCACCCAGCAATGGAACTAAAAAATTGAATGGATTTGCTGCCGGAGCGACGTCCGGGAAGGCATTATCTTCTGCCGAACTTTTGGCACGAATTCGAGTCAACCAAGATAATGCTGTTGGTGCTGGCCTCGAACATCATTTTGGTACAAGCTCAAGTTCGACTAATCAAGCAAGATCCACAGATGTCAGATCTTCTAGGGTTTCTGAAAGTATATCTGGCTCGCAACCCGAAGTATTGATTCGGCAGATATGTACATTTCTACAGCAGCGAGGCGGCAGTTCCAGTTCAGCCATCATAGTTCAGTATTTCAAGGACAGAATACCCTCTAAAGATCTTGCTTTGTTCAAGAATCTGTTAAAAGAAATAGCTACTCTGCATAAAGGGCCAAGTGGATCGAATTGGGTTCTGAAGCCAGACTACCAATAA 3654 0.4195 MEEEQDRILLNSLGVKSANPEDIERHILEKAITVPEAEGSVKEKDSSVSGNVDPLSATKAELNQKLRAVRFEIDAVASTIQQWRSDENDGECGCIGGDSQEEGVAEGSSSNDSNLQCALAADRLQSLKKTKAKLEEELSELCKDDVSKKNDEEKLIFDLVKQERRPKKKLKKEDEKPQKSSGKRQRIVSFNDDADFDAVLDAASAGFVETERDELVRKGVLTPFHKLKGFERRFQQSTASSSHNASEQENTGDLASASIERAARSISEAARARPTSKLLEYDAVPKLDAPTFPFQRLRKPLKLRDKEEEDNNDSKRKRRRPLPGRKWTRRVSCEDMQHGDSENANGYLDTSSCQNLDAQGVERVDHESSYLTLEGGLKIPENIFDALFDYQKVGVQWMWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREAKKWYPKFHVELLHDSVQDSAPRKKQANSDESDYESDISNDDDDERSLPSRNTRKWEPLINRVLRSESGLLITTYEQIRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQISAYRAFLASSEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALIDEFNASSDIFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDEENGSTETSNIFGQISEELNVVGTHTNNQENHKLTETTELVSEDVAPDNDDQSQSGSPSGKGKGKTERGDGVDEETNILKSLFGANGVHSALNHDMIVNANDEEKLRLQEEASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPASVKRKFGSTVNTQLINNSKASDGSPSNGTKKLNGFAAGATSGKALSSAELLARIRVNQDNAVGAGLEHHFGTSSSSTNQARSTDVRSSRVSESISGSQPEVLIRQICTFLQQRGGSSSSAIIVQYFKDRIPSKDLALFKNLLKEIATLHKGPSGSNWVLKPDYQ 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31399g00001 1217 Gene3D - 654 945 IPR027417 -
Stsc31399g00001 1217 Gene3D - 361 647 IPR038718 -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 298 348 - -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 1036 1055 - -
Stsc31399g00001 1217 Pfam SNF2-related domain 390 712 IPR000330 GO:0005524|GO:0140658
Stsc31399g00001 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 598 IPR014001 -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 949 963 - -
Stsc31399g00001 1217 CDD DEXHc_ERCC6 387 597 - -
Stsc31399g00001 1217 CDD CSB_WHD 1150 1217 - -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 947 973 - -
Stsc31399g00001 1217 PANTHER SNF2/RAD54 FAMILY MEMBER 154 1199 - -
Stsc31399g00001 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 904 IPR027417 -
Stsc31399g00001 1217 SMART ultradead3 383 606 IPR014001 -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 1120 1144 - -
Stsc31399g00001 1217 SMART helicmild6 761 844 IPR001650 -
Stsc31399g00001 1217 Pfam Helicase conserved C-terminal domain 737 844 IPR001650 -
Stsc31399g00001 1217 Coils Coil 1007 1027 - -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 86 112 - -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 472 503 - -
Stsc31399g00001 1217 CDD SF2_C_SNF 730 855 - -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 1122 1144 - -
Stsc31399g00001 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 648 IPR027417 -
Stsc31399g00001 1217 FunFam DNA excision repair protein ERCC-6 655 933 - -
Stsc31399g00001 1217 FunFam Protein CHROMATIN REMODELING 8 365 647 - -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 298 317 - -
Stsc31399g00001 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 894 IPR001650 -
Stsc31399g00001 1217 MobiDBLite consensus disorder prediction 164 188 - -
Stsc31399g00001 1217 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31399g00001 Stsc-Chr31399 2084 8305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31399g00001 730 898 RAD5 or RAD16-like Gene Family AT5G22750 32.544 7.97e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc31399g00001 SNF2_N 2.4e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31399g00001 K10841 - gmx:100820025 1863.58