Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31385g00002 ATGGTTGCTGTAAACAAAGATAAGAACAGCATTGATGCATTTCGTTGGGCAACCGAGAATATTGATAATCCAATTGTTATTGCTGTTCATGTCAAGGACAAAGAAATTCCTCATCAGGGCAAGAATGTTTTCCCACCTGACGAAGATGATTTAGAAATTATTTTCAAACAATTGCGTGAAGAGTGTCATCCTAAAGTCGAAAAGATGAAGGAAGCTGTAATTTATGATAGTGATGTTGTGAAAGCAATAATAGAATATGCAGCAAGGAATCGTGTTCATACACTTGTTCTTGGTGCACCCAGCGGTTCCAACAAGAAGAACACTTTGGCAAAATCTTTTTCTCTTCAATTCTCTAAGGCATCAAGCAAGAAAGTGAAAGGCGTAGAAGTAGCAATGGGAGTAATGAGATCAGCACCAGAATTCATATCAGTGTATGTAATTAAAAAGGGAAGAAAGATAGTGGCAGCAAGAGCATCAACACACCCATTGATTGGGGCAACACCACCAAGGCAATCTAGTGTTGATTTGGAAATGGAAAATAATGGATCACTAAGGGCACCATCACAACCACAATTACATAGAGGATTAAGCACCAATAGTAGATCTCAAAGAATAATGAGTGACAACAGAAGAAGATTTTCAAGGGTGGATTCAATGGCAGAGAGCGTTGACCTAACTAGATGTCGTAGAGAAACAAGGTTATCATCAATGACCCCTGAATCATCAACAATAATCTTTGATTTCAATAATTACTCTCCTTCTAATAATGGGATTGTTGCTGATTCTTCTGCCTCTCCTGTGACAAATTGCATCCATCAATCGTTGAAAATCACAAACTCCAAAAGAGAAAAGAGTGAAGTTGAAGCTGAGATGAATCAATTGAAGCAAATGCTGAAGGAAACTATGGACTTGTACAGTGTAGCTTGCAAAGAAGCTATTGCAGCCCAAAATAAGGCTAGAGAGATTAATCAATGGAAATTGAACGAGGCGCCTAAGATCGAGAAAGCTAGGCTAGCCGAAGAGGCGGCTGTGGCGCTAGCCAAGGAGGAGAAGGCTAAGGCGAGGATGGCGATTGAAGTGGCGAATCAAGCGATGAAGAAGGCTGAAGAAGAAGCAAAGCGAAGAGCGGAAGCAGAGAGGAAGGCTAAGTTGGAGGCAGAGGAGAAAGAGAAGGCCTTAAATGTGTTGGCTTATAAGGATTTTAGGTATAGGAAATACACCATAGAAGACATTGAAAAAGCTACTGATAATTTCTCAATATCATTGAGAATTGGTGAAGGTGGATATGGACCTGTCTTTAGAGGCCAACTTGATCACACCCCTGTTGCTATCAAAATCTTGAGACCTGATGCTTCACAGGGCAGAAGGCAGTTTCATCAAGAGGTTGAAGTATTATGCAGCATTAGGCATCCTAATATGGTCCTTCTCCTTGGTGCTTGCCCTGACTATGGATGCTTAGTGTATGAATTCATGGATAATGGTAGCTTAGAAGATAGACTTATTCGAAAAAATAATACTCCTCCTCTCCCATGGCCAAAACGGTTTGAAATAGCGGCCGAGATAGCGACCGCACTCCTCTTTCTTCACCAGGCTAAACCGGAGCCAATCGTGCATCGAGACCTTAAACCGGCCAACATTCTCCTTGACCGGAATTTTGTGAGCAAAATAAGTGACGTCGGCCTAGCAAGACTAGTACCATCGTCTGTAGTTGATTCGGTCACACAGTACTACATGACGACGGCGGCTGGAACGATGCATTATATCGATCCAGAGTATCAACAAACCGGAAGACTAACACCAAAATCAGATGTATATTCATTGGGAATAATGCTACTTCAAATAATCACAGCTAGGCCTCCATTAGGGTTACCTCATCAAGTTAAAAGAGCAATAGAAAAGGGTCAACTTTCTAACGTTCTTGATCCATCGGTAACTGATTGGCCAGTTGAAGAGGCACTAAGCTTTGCTAAATTGGCATTGCAATGCTCAGAACTAAGAAAAAGGGATAGGCCAGATCTTGCAACAGTTATAGTGCCAGAGCTTAATCGTTTAAGAAACTTTGGTTATGAATCAACTGGCCATAACTATTCTTCCTTCTAA 2100 0.4124 MVAVNKDKNSIDAFRWATENIDNPIVIAVHVKDKEIPHQGKNVFPPDEDDLEIIFKQLREECHPKVEKMKEAVIYDSDVVKAIIEYAARNRVHTLVLGAPSGSNKKNTLAKSFSLQFSKASSKKVKGVEVAMGVMRSAPEFISVYVIKKGRKIVAARASTHPLIGATPPRQSSVDLEMENNGSLRAPSQPQLHRGLSTNSRSQRIMSDNRRRFSRVDSMAESVDLTRCRRETRLSSMTPESSTIIFDFNNYSPSNNGIVADSSASPVTNCIHQSLKITNSKREKSEVEAEMNQLKQMLKETMDLYSVACKEAIAAQNKAREINQWKLNEAPKIEKARLAEEAAVALAKEEKAKARMAIEVANQAMKKAEEEAKRRAEAERKAKLEAEEKEKALNVLAYKDFRYRKYTIEDIEKATDNFSISLRIGEGGYGPVFRGQLDHTPVAIKILRPDASQGRRQFHQEVEVLCSIRHPNMVLLLGACPDYGCLVYEFMDNGSLEDRLIRKNNTPPLPWPKRFEIAAEIATALLFLHQAKPEPIVHRDLKPANILLDRNFVSKISDVGLARLVPSSVVDSVTQYYMTTAAGTMHYIDPEYQQTGRLTPKSDVYSLGIMLLQIITARPPLGLPHQVKRAIEKGQLSNVLDPSVTDWPVEEALSFAKLALQCSELRKRDRPDLATVIVPELNRLRNFGYESTGHNYSSF 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31385g00002 699 Gene3D Phosphorylase Kinase; domain 1 397 490 - -
Stsc31385g00002 699 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 114 - -
Stsc31385g00002 699 Gene3D HUPs 1 129 IPR014729 -
Stsc31385g00002 699 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 390 490 - -
Stsc31385g00002 699 Pfam Protein tyrosine and serine/threonine kinase 421 676 IPR001245 GO:0004672|GO:0006468
Stsc31385g00002 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Stsc31385g00002 699 Coils Coil 344 395 - -
Stsc31385g00002 699 ProSiteProfiles Protein kinase domain profile. 418 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31385g00002 699 Gene3D Transferase(Phosphotransferase) domain 1 491 692 - -
Stsc31385g00002 699 MobiDBLite consensus disorder prediction 183 204 - -
Stsc31385g00002 699 Coils Coil 277 304 - -
Stsc31385g00002 699 PANTHER OS02G0152300 PROTEIN 2 691 - -
Stsc31385g00002 699 SUPERFAMILY Protein kinase-like (PK-like) 400 677 IPR011009 -
Stsc31385g00002 699 SMART serkin_6 418 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31385g00002 Stsc-Chr31385 4546 10533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31385g00002 69 688 Receptor kinase-like Gene Family AT5G12000 54.474 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc31385g00002 PK_Tyr_Ser-Thr 7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31385g00002 - - gmx:100786386 720.309