Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31384g00001 ATGGCTCGTCTAAGATCACAATCCATCGCTACACTTTCTTTTTTCTCCTTTCTTGTTTTGTCCAATGCAATTGGCACTGAGGAAATTACTTACCTCTTGAAGCTTAGGGAAGCCATAACACCACCTCTCTCCCAGTGGTTCCAAACCAGAGACATGTGCGCATGGAACGGAATCACGTGCGCCTACTACGACGACTCACTTTACGTTCAATCCATTGATCTCAGTTCAATGTCCCTAACTGGAGTGCTTCCTCCTGATCTCAGTTCTTGCTTCCAAGGTCTCCATTTTCTCCGTCTTCAAAACAACTCTTTCCATGGCCCTCTTCCCTCTCTCAGGTACCTACCAGAACTTCAGGAGGTCTACCTTGACCACAACAACTTCACCTCTATCCCCGATAATTGCTTCCAAGGTCTATTCAATCTCAAGAATCTCAGTTTGAGCTACAATCTTAACCTTCAACAATGGACATTTCCTATTTCTTTGACTAATTCCTTGAAACTCACCGATCTTGACCTCGCAGCCACAAATCTCACAGGCTCCTTGCCGGACATTTTCACTTCCTTCCCTACACTCCGCCGTCTCGATCTTTCTAACAACAAACTCGGCGGTCCCTTGCCGAGTTCTTTTGAATTCTCCGAGATTCAAAACCTTATTCTTCACAATCAACTGAGTAATAAATTTTCAGGCACTATAAATGTTCTTTCATCCATGACCGAATTGACCGAGGTGTTGCTTCAGGGGAACAGTTTCAACGGTCTAATTCCGGATCTGTACAACTGCATCAAATTGCAGGTTCTGATGCTTCAGGACAACAACTTGACAGGTACAGTTCCACAGTCTCTGATGAACCTATCTAGCTTGGAAAACGTTTCCTTGGCCAATAATTGGTTACAGGGTCCTCTGCCGGTGTTCGGCGAGCAGGTGGCGGTGGCTCTTGGTGGTAACGGTTTCTGTTTAGACCATGGTGGGCCTTGTGACAAGGCAGTTACAGCTTTGCTTGAGGTTGCTGCAGGGTTTGGGTATCCCTATCTGTTGGCCCGTTCTTGGCAAGGGAATAATCTTTGTGATGGTTGGAGATTCATTTTGTGTGATGAATTGGGTAGGATTAGGACTGTGAACTTGTCAAAGTTGAAATTGACAGGAGTTATATCACCTGCATTTGGTGATTTAACCGATTTGTGGTACTTGTATCTCGATGGCAACGATTTAAGAGGTTTGATACCTCAGATCTTGTCAAATCTGCCTCATCTTAAGGTTCTAGATGTTTCTAATAACAGTTTGTCAGGAAAGGTTCCAAGATTCTCACCTGTGGTGTTGTTCATCGCTAAAGGTAATTCTTTGCTTCTTCATGATGATCTCATTTCTCAAACAAAGGGAACAACTTCAACTTCAACTTCAACTTCATCCTTGCCTCCATGGCTTGCAGGGGTACTAGCAGGTGGTGTTGGACTTACGATTGTAATGTATCTTATGATTATTGCTAATAATCGTAAGAGGTGTTTTAGTTTACTGCAGAAGATGATGATATGGAAGAAAACAACCACCTTACCAGACTACAATGTCGAAGAGTTCATAAAGAGTTATCAATCGATGACTCTAAAACGATATAGTTATAGCGAACTAAAAAAGATAACAAATTCATTCCACGAAAGTTTAGGTCAAGGGGGATATGGTATTGTGTATAAAGCAAGCTTGGTTGATGGTCGAAAAGTGGCAGTGAAGATACTGAAAGAGTCAAAGGGAAGAGGGGAAGAATTTGTAAATGAGGTTATAACTATTGGTAGAACATCCCATGTGAATATTGTTTCACTTTTGGGATTTTGTTATGAGATGAACAAAAGAGCACTCGTTTACGAATTCATGCCTAATGGCTCTTTGGATAAGTTCATTTATAAAAAAGGATCTTCTACTGCTGTCTGTGATTTGGATTGGAGCACATTGTATAGAATCACAATTGGTATTGCTCGAGGATTGGAATATTTACATCAAGGATGTAACACAAGAATTTTGCATCTTGATATGAAGCCTCAAAATATTCTTTTAGATGAAAATTTTGTTCCAAAAATTGCTGACTTCGGATTAGCCAAAATTTGTAAGAAAGACAAAAGTGTCGTGTCTATATCAGGCGCAAGAGGAACTCTGGGATTCATTGCACCGGAAGTATTTAGCAGAACATATGGTGGAGTTTCTCACAAATCAGATGTATATAGTTTTGGCATGTTAATTCTTGAAGTGGTCGGTGGAAGAAAGAACTATGACAGTGGAAGATCACATACTAGTGAAATGTATTTTCCGGATTGGATTTATAAGAGCTTGGAGAAAGGTAATATTCTTGCAAGATGTTTGCCCAGCACAAAGGAAGAAAATGACATGATAATGAAGATTACTTTAGTTAGTTTATGGTGCATTCAAACCAATCCAAAAAATCGACCATCCATGACTAAAGTAATAGAGATGTTAGAAGGATTACTTGAGTCAATACCATATCCTCCAAAACCTGTCTTGCATTCTCCTGAAAGACTTCCCACAGGGTTTGAAGATTTTGAAGATTTATCTAGTAGTGCACATGAATCAAATTCACTAGCCACAGAGAATAATGGTTCCATTAAATAA 2613 0.403 MARLRSQSIATLSFFSFLVLSNAIGTEEITYLLKLREAITPPLSQWFQTRDMCAWNGITCAYYDDSLYVQSIDLSSMSLTGVLPPDLSSCFQGLHFLRLQNNSFHGPLPSLRYLPELQEVYLDHNNFTSIPDNCFQGLFNLKNLSLSYNLNLQQWTFPISLTNSLKLTDLDLAATNLTGSLPDIFTSFPTLRRLDLSNNKLGGPLPSSFEFSEIQNLILHNQLSNKFSGTINVLSSMTELTEVLLQGNSFNGLIPDLYNCIKLQVLMLQDNNLTGTVPQSLMNLSSLENVSLANNWLQGPLPVFGEQVAVALGGNGFCLDHGGPCDKAVTALLEVAAGFGYPYLLARSWQGNNLCDGWRFILCDELGRIRTVNLSKLKLTGVISPAFGDLTDLWYLYLDGNDLRGLIPQILSNLPHLKVLDVSNNSLSGKVPRFSPVVLFIAKGNSLLLHDDLISQTKGTTSTSTSTSSLPPWLAGVLAGGVGLTIVMYLMIIANNRKRCFSLLQKMMIWKKTTTLPDYNVEEFIKSYQSMTLKRYSYSELKKITNSFHESLGQGGYGIVYKASLVDGRKVAVKILKESKGRGEEFVNEVITIGRTSHVNIVSLLGFCYEMNKRALVYEFMPNGSLDKFIYKKGSSTAVCDLDWSTLYRITIGIARGLEYLHQGCNTRILHLDMKPQNILLDENFVPKIADFGLAKICKKDKSVVSISGARGTLGFIAPEVFSRTYGGVSHKSDVYSFGMLILEVVGGRKNYDSGRSHTSEMYFPDWIYKSLEKGNILARCLPSTKEENDMIMKITLVSLWCIQTNPKNRPSMTKVIEMLEGLLESIPYPPKPVLHSPERLPTGFEDFEDLSSSAHESNSLATENNGSIK 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31384g00001 870 SMART LRR_typ_2 414 436 IPR003591 -
Stsc31384g00001 870 SMART LRR_typ_2 237 260 IPR003591 -
Stsc31384g00001 870 SMART LRR_typ_2 390 413 IPR003591 -
Stsc31384g00001 870 SMART LRR_typ_2 114 137 IPR003591 -
Stsc31384g00001 870 SMART LRR_typ_2 188 211 IPR003591 -
Stsc31384g00001 870 Gene3D Ribonuclease Inhibitor 327 448 IPR032675 -
Stsc31384g00001 870 PANTHER OSJNBA0070M12.3 PROTEIN 12 826 - -
Stsc31384g00001 870 Pfam Leucine rich repeat N-terminal domain 328 364 IPR013210 -
Stsc31384g00001 870 Pfam Leucine rich repeat N-terminal domain 28 60 IPR013210 -
Stsc31384g00001 870 SUPERFAMILY Protein kinase-like (PK-like) 525 821 IPR011009 -
Stsc31384g00001 870 Pfam Leucine Rich Repeat 191 211 IPR001611 GO:0005515
Stsc31384g00001 870 Gene3D Ribonuclease Inhibitor 25 319 IPR032675 -
Stsc31384g00001 870 ProSitePatterns Protein kinases ATP-binding region signature. 552 574 IPR017441 GO:0005524
Stsc31384g00001 870 FunFam PR5-like receptor kinase 621 830 - -
Stsc31384g00001 870 Gene3D Transferase(Phosphotransferase) domain 1 621 828 - -
Stsc31384g00001 870 Gene3D Phosphorylase Kinase; domain 1 520 620 - -
Stsc31384g00001 870 MobiDBLite consensus disorder prediction 854 870 - -
Stsc31384g00001 870 SMART serkin_6 546 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31384g00001 870 MobiDBLite consensus disorder prediction 835 870 - -
Stsc31384g00001 870 CDD STKc_IRAK 552 823 - -
Stsc31384g00001 870 SUPERFAMILY L domain-like 42 434 - -
Stsc31384g00001 870 FunFam Leucine-rich repeat receptor-like kinase 327 451 - -
Stsc31384g00001 870 Pfam Protein kinase domain 549 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31384g00001 870 Pfam Leucine rich repeat 369 427 IPR001611 GO:0005515
Stsc31384g00001 870 Pfam Leucine rich repeat 115 153 IPR001611 GO:0005515
Stsc31384g00001 870 ProSiteProfiles Protein kinase domain profile. 546 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31384g00001 870 PRINTS Leucine-rich repeat signature 414 427 - -
Stsc31384g00001 870 PRINTS Leucine-rich repeat signature 191 204 - -
Stsc31384g00001 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 669 681 IPR008271 GO:0004672|GO:0006468
Stsc31384g00001 870 FunFam S-receptor-like serine/threonine-protein kinase 517 620 - -
Stsc31384g00001 870 ProSiteProfiles Leucine-rich repeat profile. 116 137 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31384g00001 Stsc-Chr31384 450 3820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31384g00001 533 853 Receptor kinase-like Gene Family AT5G38280 57.975 4.07e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc31384g00001 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31384g00001 - K00924 aip:107635702 828.935