Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31357g00002 ATGGATTCAAACACATCAAGCTTTCTTTTGAACTCCTCAACTTTTCACTCAGTTTTTTACCAAGATAAACAGAATGATGACATAATTGATCTTGGTCTTAGCCTCAAAACTGTTCAACATGAGGCTTCTCATTCTTCTGCCAACTTGTATGATGATGACATTCTGGATTGGCCTCACTCTAATCTCAACCTGAAGAATTCAAGCAAGAATTTTGATGAAGAGATAGAAGGGGTCCAGAGCAATGAGAGATGGGCATATGTGAAGGTGAATATGGATAGGGTTACCATTGGTAGGAAAATTTGCATACTTGATCATGGAGGATATTCAAGTCTAGCAATCCAATTAGAAGACATGTTTGGAAGCCAAAGCCTCTCTGGTCTAAGATTGTTCCAACCTGATTCAGAGTACTCATTGTTCTACAAAGACAGAGAAGATAATTGGAGGAATGTAGGTGATGTCCCATGGAAAGAGTTTGTAGAATGTGTGAAGCGATTAAGGATTGCGAAAAAGAATGCAGGCCTTGCTTCCTGTTCATCTGGATACATCTAA 549 0.3898 MDSNTSSFLLNSSTFHSVFYQDKQNDDIIDLGLSLKTVQHEASHSSANLYDDDILDWPHSNLNLKNSSKNFDEEIEGVQSNERWAYVKVNMDRVTIGRKICILDHGGYSSLAIQLEDMFGSQSLSGLRLFQPDSEYSLFYKDREDNWRNVGDVPWKEFVECVKRLRIAKKNAGLASCSSGYI 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31357g00002 182 Pfam AUX/IAA family 61 170 IPR033389 -
Stsc31357g00002 182 ProSiteProfiles PB1 domain profile. 84 170 IPR000270 GO:0005515
Stsc31357g00002 182 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 31 171 IPR003311 GO:0005634|GO:0006355
Stsc31357g00002 182 SUPERFAMILY CAD & PB1 domains 84 169 - -
Stsc31357g00002 182 Gene3D - 78 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31357g00002 Stsc-Chr31357 6611 7567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31357g00002 79 167 B3 DNA Binding Superfamily AT1G19220 36.667 2.29e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc31357g00002 AUX_IAA 3e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31357g00002 K14484 - gmx:100777024 303.138