Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31352g00001 ATGGATAACCAGGTAGCGCCCCTTCTCCTCATCGTCCTCCTCTTCACTATTTTGGTATCTGATACTGAATCAGCATCGTGCCCCTTTGATCTCAACTACGTTGACACCTTACCATGGGACACATCAACGTGCAGAGACCCAATTGACGCACAACACTGCTGCCAAACCCTGCTCAGTCTTATCGGCATCGGACTCTCTCAGCACCTCAAACAAACCTCCCTGTTCCAACTCCCGGATATTAATACTTCCACGTCTTGCTTAACCGAATTCAGATCCAAGCTTTCACCCTTGCTGCTGAACACATCAATGGTGTCCACGTGCTTCCCGAACTCGTATTTCGTGTCGAATTCTTCGAGTTGTGCAGGGATTGAGAACATCCAAGATTGGAGGCAGAAGGCGGGGCTAACGACCCCACTGGACAATTCTTGCAGTGGCGACATGAGTGGCCAATCGCAGTGCAGCATTTGCACCGACGCGGGATTCAAGGTCACTGCAGACTTGAACCAAAAGGATCCTAATTCGACCAAATGCTTCTACTTCACAATCTTGTATGCTGCTGGTATTGTTAACAAGCTTGGTCCAAGCAATTTGGGCACGGCTTCTTGCATTCTAGGCTTGCCACTCTCCACGAAGAAAGGCTCGTGGAATAAGGAAAAGGTTTTGAGATTGGTTTTTGGGATATTGGGTGCTCTTGGTGGTGTTATTCTAGCTTTGGTTCTGATTGTTTTGTATAGAAAGTGGGATAGGCGGAGGAGGGAGAACCTTTATCACAGGTCGATCGAAAACAGTGTTAGGGACAGCGTTTTGCCTAACGCTGGAGCGAAATGGTTTCATATATCGGAGCTTGAACGAGCCACCAACAAATTTTCGCAGAGGAATATGATTGGTCAAGGTGGTGACGGGGTAGTGTACAAAGGGACTCTTTCAGACGGCACTTTGGTTGCGGTTAAAGAGATTCTGAACTTGGAAAGCAAAGGGGATGAGGAGTTTTGCTATGAGGTAGATATCATAAGCAAAATAAAGCATAGAAATCTTCTTGCTCTTCGAGGTTGTTGCGTTACAAGCGATAATTTGAAAGGTAAGAGGAGGTTTCTGGTGTATGATTATATGCCTAATGGCAGCCTCAGTACCCAATTGTCCATTGCTGGTGCTAATAGGCTAACATGGCCACAGAGGAAGAGCATAATTCTTGATGTGGCTAAGGGGCTTGCTTATTTGCATTACGAAATCAAACCACCAATTTATCACCGCGACATCAAAGCCACCAACATACTTCTTGATTCCAAGATGAAAGCGAAAGTGGCAGATTTCGGGTTGGCAAAGCAGGGCAATGAAGGCCAATCTCACCTCACAACAAGGGTGGCCGGCACATACGGTTATCTAGCCCCAGAGTATGCGCTATACGGCCAACTAACAGAGAAGAGTGATGTGTATAGCTTTGGAATTGTGATTTTAGAGATCATGAGTGGCAGGAAGGTACTAGACACCACGAACTCGAATTCAAACGTGGTCTTGATCACGGATTGGGCGTGGATGCTCGCGAAATCAGGACGGACGGAGGAGATTCTTGATGAGTCATTAAGGGGAGAAGGGCCAGAGAAGATCATGGAAAGGTTTGTTCTTGTTGGAATTCTTTGTGGTCATGCAATGGTGGCGCTTAGGCCTACAATTGCCGAGGCAATGAAGATGTTGGAAGGTGATATTGAGATTCCTCAGTTGCCAGACAGGCCAGTACCACTTGGTCATGAGTCGTTTCAATCTTCTCTTCTCTCTGGATTGCAAAGAAGCGGAAGGTCCACGCCATATCTCTCATCTTATGCAACAAGTATCACCTCTACAAGCACACTGTAG 1851 0.4668 MDNQVAPLLLIVLLFTILVSDTESASCPFDLNYVDTLPWDTSTCRDPIDAQHCCQTLLSLIGIGLSQHLKQTSLFQLPDINTSTSCLTEFRSKLSPLLLNTSMVSTCFPNSYFVSNSSSCAGIENIQDWRQKAGLTTPLDNSCSGDMSGQSQCSICTDAGFKVTADLNQKDPNSTKCFYFTILYAAGIVNKLGPSNLGTASCILGLPLSTKKGSWNKEKVLRLVFGILGALGGVILALVLIVLYRKWDRRRRENLYHRSIENSVRDSVLPNAGAKWFHISELERATNKFSQRNMIGQGGDGVVYKGTLSDGTLVAVKEILNLESKGDEEFCYEVDIISKIKHRNLLALRGCCVTSDNLKGKRRFLVYDYMPNGSLSTQLSIAGANRLTWPQRKSIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVLDTTNSNSNVVLITDWAWMLAKSGRTEEILDESLRGEGPEKIMERFVLVGILCGHAMVALRPTIAEAMKMLEGDIEIPQLPDRPVPLGHESFQSSLLSGLQRSGRSTPYLSSYATSITSTSTL 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31352g00001 616 FunFam Receptor-like serine/threonine-protein kinase At4g25390 254 369 - -
Stsc31352g00001 616 SUPERFAMILY Protein kinase-like (PK-like) 274 581 IPR011009 -
Stsc31352g00001 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Stsc31352g00001 616 SMART serkin_6 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31352g00001 616 Gene3D Phosphorylase Kinase; domain 1 251 369 - -
Stsc31352g00001 616 ProSiteProfiles Protein kinase domain profile. 289 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31352g00001 616 CDD STKc_IRAK 295 566 - -
Stsc31352g00001 616 Gene3D Transferase(Phosphotransferase) domain 1 370 578 - -
Stsc31352g00001 616 Pfam Protein kinase domain 291 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31352g00001 616 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 139 594 - -
Stsc31352g00001 616 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 370 572 - -
Stsc31352g00001 616 Pfam SPARK 23 178 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31352g00001 Stsc-Chr31352 3209 5422 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31352g00001 1 594 Receptor kinase-like Gene Family AT1G11050 52.989 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Stsc31352g00001 Pkinase 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31352g00001 - - gmx:100820563 916.376