Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31336g00002 ATGGAATCGAAAAGCGATAACGGAAAAGAGTTATCTAGCGACGACGATGGATCTCCGAGATGTGTAATGGAACCTCATGTTTCCGAAACAGAATCTGATTCCGGCAGTATTAGCGGCAGCAGCAGCTCGTTCTCGCCGGAGAAGCTTCCGCTTCCGCCACCGCCGGCGGTGGCAGCGGCGGGGCTTAGGAAATTGAATTTGAAGGAGAGCAACTTGCAGCAGTGGAAGACGGTGATGGAGGTGTTCAAGTTCAAGAACGTTAAGAAATTGGCGACGATTCCTCTGCTGTCTGCGGGGAACGAAATCACGAGGAGGAAGGGTTTAGCAAAGAAACTCGCTCGGATTCGAAGCGCAGAAGATAGCATCGATATCGGTGTTGTTCCGACGAAGCCTTCTTGGAGGAACTTCGATTACGCGGAGCTCGCTGCTGCAACTAACGATTTCAACCCCGAGAATCTGGTTGGTAAAGGTGGGCATGCAGAAGTGTACAAAGGGCACCTACCTGATGGGCAAGTTATAGCAGTGAAGAGACTAATGAAGAATGCCAAGGATGCTGGGGACAGAGCTGGTGACTTCTTGACAGAACTTGGGATCATTGCACATATAAACCACCCAAATGCAACACGCCTTGTTGGCTTTGGGATTGAACGTGGCCACTACTTTGTACTAGAATATGCTTCACATGGCAGCCTTTCTTCTTTGCTCTTTGGTTCAGAATGCTTGGATTGGAAGACAAGGTTTAAGGTTGCTATTGGGGTGGCAGAGGGGTTGCAGTATCTCCATCAAGATTGTCCTAGAAGAATCATTCATAGGGACATCAAAGCCTCTAACATACTACTCAATGAAAATTATGAAGCTGAGATTTCAGATTTTGGATTGGCAAAGTGGCTTCCAACTAATTGGGCTCACCACATTGTCTTTCCAATTGAAGGCACATTTGGGTACTTGGCTCCAGAATACTTCATGCATGGAGTTGTGGACGAGAAGACTGATGTATTCGCATTTGGGGTTTTGTTACTGGAGATCTTAACTGGTCGTCGCGCAGTCGATTCAGATAGTAGGCAAAGCCTTGTGATCTGGGCTAAGCCACTGCTGGATACAATGAATGTGAAGGAAATAGCAGACCCCAGATTAGAAGGGGAATATGATCCTATTGAAATGAAGCATGCCATGGTGACAGCTTCCTTGTGTATCCACCAGATATCCTCCAAGAGGCCATTCATGAATCAGGTTGTAGCCTTACTCAAGGGTGAAGCAGCAGCTATTGAACCCAAACAGAACTCACCAGCAACAAGATCACTCTTGATAGAGGCATGTGACCTTGAGGACTATACTTGCTCTAGATACTTGAAGGATCTCAACCGCCATAGGGAGTTAATCAATGAGTGA 1389 0.4694 MESKSDNGKELSSDDDGSPRCVMEPHVSETESDSGSISGSSSSFSPEKLPLPPPPAVAAAGLRKLNLKESNLQQWKTVMEVFKFKNVKKLATIPLLSAGNEITRRKGLAKKLARIRSAEDSIDIGVVPTKPSWRNFDYAELAAATNDFNPENLVGKGGHAEVYKGHLPDGQVIAVKRLMKNAKDAGDRAGDFLTELGIIAHINHPNATRLVGFGIERGHYFVLEYASHGSLSSLLFGSECLDWKTRFKVAIGVAEGLQYLHQDCPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPTNWAHHIVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLEILTGRRAVDSDSRQSLVIWAKPLLDTMNVKEIADPRLEGEYDPIEMKHAMVTASLCIHQISSKRPFMNQVVALLKGEAAAIEPKQNSPATRSLLIEACDLEDYTCSRYLKDLNRHRELINE 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31336g00002 462 SUPERFAMILY Protein kinase-like (PK-like) 132 428 IPR011009 -
Stsc31336g00002 462 PANTHER OS08G0249100 PROTEIN 15 428 IPR046958 -
Stsc31336g00002 462 Gene3D Transferase(Phosphotransferase) domain 1 227 433 - -
Stsc31336g00002 462 ProSiteProfiles Protein kinase domain profile. 148 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31336g00002 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Stsc31336g00002 462 MobiDBLite consensus disorder prediction 1 56 - -
Stsc31336g00002 462 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 227 429 - -
Stsc31336g00002 462 SMART serkin_6 148 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31336g00002 462 Gene3D Phosphorylase Kinase; domain 1 109 225 - -
Stsc31336g00002 462 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 123 225 - -
Stsc31336g00002 462 ProSitePatterns Protein kinases ATP-binding region signature. 154 176 IPR017441 GO:0005524
Stsc31336g00002 462 MobiDBLite consensus disorder prediction 1 22 - -
Stsc31336g00002 462 Pfam Protein kinase domain 151 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31336g00002 462 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31336g00002 Stsc-Chr31336 8560 13542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31336g00002 136 411 Trihelix Transcription Factor Family AT1G68690 46.667 2.17e-72 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc31336g00002 Pkinase 8.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31336g00002 - - gmx:100775930 659.448