Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31336g00001 ATGGCTCGTGCAACTAACTGGCTATCGTTTTCGCTATCTCCAATGGAAATGCTAAGAACATCTGAGCCACACTTCTCTCAATACGACGCCGCTTCACCCGCCACCACCAACTACTTCGTAGATAACTTCTACGCTAACGGTTGGGGGAACCAGGGAAAGGAACAGCAACCGCACGGTATGGTGGAGCAGTCGCTATTTATGACGAGCTACGTCGACTCGTCGCAGGAGCTAGGTCACGCGCCGCCGCATGCGGCGCCGACGACTGTGGTGCCGAAGCTGGAGGATTTTCTCGGCGATTCGTCGTCGTCGATGATGCGATACTCCGATAGCCAGACGGAGACGCAGGATTCGTCGCTGACGACGCACATGTACGACCACGGCGGCGCATACTTCGGCGGCGAGCACCAAGATCTGAAGGCCATTACTGGATTCCAAGCTTTCTCCGGCGCTAACTCCGGCTCTGAGGTGGACGACTCAGCCTCCATCGGTAGGGCACAGCACGGCGGTGGGAACGAGTTCGGGACTCGCTCCGTTGATTCCTCCGGGAACGAGCTGGCGTTCTCCAACGGCGGCGCTGGTGCTACCGCCACCGGAGCTTTGTCACTAGGCGTAGCTCAGAGCTCGGCGGAGAAGGCCGTGGTAGCATCCGATTCCGATAGTTCGAAGAAGATCGCCGATACCTTCGGTCAGCGAACTTCAATTTACAGAGGAGTCACTAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCCAGAAAAGGGCGTCAAGTCTATTTGGGTGGATATGACAAGGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCCTTAAAGTATTGGGGTCCCACTGCTACCACCAACTTCCCTGTTTCCAATTACCCGAAGGAACTAGAGGAGATGAAGCATGTAACAAAGCAAGAATTCATTGCATCACTGAGAAGGAAAAGTAGCGGTTTTTCCAGGGGAGCTTCCATATACAGAGGTGTTACAAGGCATCACCAACAAGGTAGGTGGCAAGCGAGAATTGGCCGCGTCGCCGGAAACAAAGATCTTTACTTAGGAACATTTGCAACTGAAGAGGAAGCTGCTGAGGCATATGACATAGCAGCCATAAAGTTCCGAGGTTCAAATGCAGTAACCAACTTTGAGATGAGCAGGTACGATGTTGATGCCATAATGAAGAGTTCTCTTCCCGTCGGCGGCGCAGCCAAACGCTTGAAGCTCTCCCTAGAATCAGAGCAGAAGTCTGCCATCGCCGCCAGCAGCCAGCAGCAACCAGAGTGTACAAACATGAGTGGCAGCAATATCAACTTCTCATCAGCCATACACCAGCCAATTGCTTCCATCCCCTGCCGAATCCCATATGAGTCCGCGCAAGCTTACTATCACCACAACCTCTTCCACCATTTCCATCCCAGCAATGGTGTAGAAACCGCTGCTGTAACTTCTGCCAATGCAGCTGGACTGACTGCACTGCCGGCGGCGGCTGCAGCACCCGAGTTCTTCATATGGCCTCCCCAGTCCTATTGA 1563 0.5355 MARATNWLSFSLSPMEMLRTSEPHFSQYDAASPATTNYFVDNFYANGWGNQGKEQQPHGMVEQSLFMTSYVDSSQELGHAPPHAAPTTVVPKLEDFLGDSSSSMMRYSDSQTETQDSSLTTHMYDHGGAYFGGEHQDLKAITGFQAFSGANSGSEVDDSASIGRAQHGGGNEFGTRSVDSSGNELAFSNGGAGATATGALSLGVAQSSAEKAVVASDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYPKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGSNAVTNFEMSRYDVDAIMKSSLPVGGAAKRLKLSLESEQKSAIAASSQQQPECTNMSGSNINFSSAIHQPIASIPCRIPYESAQAYYHHNLFHHFHPSNGVETAAVTSANAAGLTALPAAAAAPEFFIWPPQSY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31336g00001 520 CDD AP2 233 302 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 ProSiteProfiles AP2/ERF domain profile. 234 300 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 MobiDBLite consensus disorder prediction 155 182 - -
Stsc31336g00001 520 SMART rav1_2 234 306 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 SMART rav1_2 336 400 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 86 440 - -
Stsc31336g00001 520 Pfam AP2 domain 336 386 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 Pfam AP2 domain 234 292 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 Gene3D AP2/ERF domain 336 396 IPR036955 GO:0003700|GO:0006355
Stsc31336g00001 520 Gene3D AP2/ERF domain 234 302 IPR036955 GO:0003700|GO:0006355
Stsc31336g00001 520 PRINTS Ethylene responsive element binding protein signature 376 396 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 SUPERFAMILY DNA-binding domain 233 302 IPR016177 GO:0003677
Stsc31336g00001 520 ProSiteProfiles AP2/ERF domain profile. 336 394 IPR001471 GO:0003700|GO:0006355
Stsc31336g00001 520 FunFam AP2-like ethylene-responsive transcription factor 335 396 - -
Stsc31336g00001 520 SUPERFAMILY DNA-binding domain 335 396 IPR016177 GO:0003677
Stsc31336g00001 520 FunFam AP2-like ethylene-responsive transcription factor ANT 233 302 - -
Stsc31336g00001 520 CDD AP2 335 396 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31336g00001 Stsc-Chr31336 1789 6896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31336g00001 64 520 AP2-EREBP Transcription Factor Family AT5G10510 57.276 3.90e-169 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Stsc31336g00001 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31336g00001 K09285 - gmx:100775390 686.411