LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc31329g00001	ATGTCTCGCCAGCTCACACTCTCTGATCCAAGAATCTCAGAAGCAAGACTCAGCTGCGGCACAACGAGGGCCCCACTCTACTCCAACTACATCCCAACCTTCATCAAAGAAATGGAGTTCCTCTCCCAGCAAGTAACCGCCCACAACTGGGCAACCCATTCCGTCGACGGTGGCGGTAGCGGCAACACCATCTACGGCCTCACGCAGTGCTTCAACGACCTCTCCCACACAGACTGCCTCCTCTGCTACGCCTCCAGCCGGACCACTCTCCCCCGCTGCCTCCCCTCCTTCTCCGCCCGCATCTACCTTGACGGCTGCTTCCTCCGTTACGACCGTTACCGCTTCTATTCTGAGGACACCGACGCCATCAGGGACACTGTCAATTGCACCGGTGGGAACGTGGAGGGGGTGGCTCACGATAGGATTGTTGGGAGGGTTATTGATGGTGTTGTTCTGAAAGTTGTCGCTAATGGTGGCAGTTTTGCTGTGGGAAAGATTGATGGAGTTTACGGTTTGGCGCAGTGCTGGAAAACTGTTGGGAATGATGGGTGCAGAAACTGCTTGAGGAAAGCTGGGAAGCAAGTGAGAGGGTGTTTGCCGAAAAAAGAAGGAAGGGCCTTAAATGCTGGCTGTTATTTGAGGTATTCAACGGAGAAGTTCTACAACGAGCAGAGTACAGTAGAAGCTGGAACTGAAAACAATAATCATGGTCAAATTTGCTCCTCCATAAGGGAGTCTAGCTTGAATTACAAGTATGAAACTCTGGAGAAAGCCACGGATTATTTCAACCCTTCAAGAAAAATAGGCCAAGGTGGAGCGGGTTCGGTATTCAAAGGTGTTCTCCCAAATGGTAAAGTTGTTGCTGTTAAGAGGTTGGTCTTCAATAACAGGCAATGGGTAGATGAGTTCTTCAATGAAGTAAATTTAATCAGTGGAATTGAACATAAGAACCTTGTCAAACTTTTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTTTATGAGTTCCTTCCCAACAAGAGTTTAGATCAATCTATCTTTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCCAAAATAAGAATCATTCATCGGGACATCAAAAGCAGCAACATTCTTCTAGATGAGAATCTTACACCTAAGATTGCAGATTTTGGTCTTGCTCGCTGTTTTGGTGCTGATAAGACACATTTGAGTACTGGAATTGCTGGAACACT	1220	0.4795	MSRQLTLSDPRISEARLSCGTTRAPLYSNYIPTFIKEMEFLSQQVTAHNWATHSVDGGGSGNTIYGLTQCFNDLSHTDCLLCYASSRTTLPRCLPSFSARIYLDGCFLRYDRYRFYSEDTDAIRDTVNCTGGNVEGVAHDRIVGRVIDGVVLKVVANGGSFAVGKIDGVYGLAQCWKTVGNDGCRNCLRKAGKQVRGCLPKKEGRALNAGCYLRYSTEKFYNEQSTVEAGTENNNHGQICSSIRESSLNYKYETLEKATDYFNPSRKIGQGGAGSVFKGVLPNGKVVAVKRLVFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEFLPNKSLDQSIFAEGLAYLHGGSKIRIIHRDIKSSNILLDENLTPKIADFGLARCFGADKTHLSTGIAGTL	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc31329g00001	407	FunFam	Os07g0541700 protein	346	406	-	-
	Stsc31329g00001	407	ProSiteProfiles	Protein kinase domain profile.	262	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc31329g00001	407	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	363	375	IPR008271	GO:0004672\|GO:0006468
	Stsc31329g00001	407	SMART	serkin_6	262	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc31329g00001	407	SUPERFAMILY	Protein kinase-like (PK-like)	240	406	IPR011009	-
	Stsc31329g00001	407	FunFam	Cysteine-rich receptor-like protein kinase 2	12	115	-	-
	Stsc31329g00001	407	ProSiteProfiles	Gnk2-homologous domain profile.	12	115	IPR002902	-
	Stsc31329g00001	407	Pfam	Protein kinase domain	264	397	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc31329g00001	407	Pfam	Salt stress response/antifungal	34	113	IPR002902	-
	Stsc31329g00001	407	Pfam	Salt stress response/antifungal	166	217	IPR002902	-
	Stsc31329g00001	407	Gene3D	Transferase(Phosphotransferase) domain 1	345	407	-	-
	Stsc31329g00001	407	Gene3D	-	125	220	IPR038408	-
	Stsc31329g00001	407	Gene3D	-	15	115	IPR038408	-
	Stsc31329g00001	407	Gene3D	Phosphorylase Kinase; domain 1	222	337	-	-
	Stsc31329g00001	407	FunFam	Cysteine-rich receptor-like protein kinase 2	228	337	-	-
	Stsc31329g00001	407	ProSiteProfiles	Gnk2-homologous domain profile.	121	220	IPR002902	-
	Stsc31329g00001	407	FunFam	Cysteine-rich receptor-like protein kinase 3	125	220	-	-
	Stsc31329g00001	407	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	65	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc31329g00001	Stsc-Chr31329	16945	19121	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc31329g00001	9	407	Receptor kinase-like Gene Family	AT5G40380	50.985	1.81e-155	446

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc31329g00001		Pkinase	1.7e-23	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc31329g00001	-		-	gmx:100790404	611.683