Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31328g00002 ATGGCGATCTCAATTCCAAGAAGAGAGCTCTTCATTGATGGAGAGTGGAAAGCTCCTCTCCTCAACAACCGAATTCCTATCATAAACCCTTCCACTGAACTCATCATAGGGGATATCCCAGCAGGTACAAAGGAAGATGTGGAAATAGCAGTGGAAGCTGCAAGAAGAGCACTGAACCGGAACAAAGGAAGAGACTGGTCAACGGCTTCTGGCTCTCTTCGTGCTACCTACCTTCGAGCCATTGCTGCAAAGATAACAGAGAGAAAGGATGAGCTTGCAAAGCTTGAAGCCATTGATAATGGAAAACCACTGGATGAAGCAGCAGCTGACATGGATGATGTTATTGCTAGTTTTAGCTACTATGCTGAACTTGCTGAAGGGTTGGATGCAAAGCAAAAGGCATCTGTGTCTCTTCCTATGGAGAACTTCAAGAGTTATGTGATCAAGGAGCCAATTGGTGTTGTTGCCTTGATTACTCCATGGAACTATCCGATGCTAATGGCTGCATGGAAAGTTGCTGCTGCTCTGGCTGCTGGTTGCACTGCAGTATTGAAGCCATCTGAACTGGCATCTGTCACCTGCCTAGAACTGGCTGACATATGCAAAGAAGTAGGTCTTCCAGCAGGGGTGTTAAATGTGATAACTGGATTAGGCACCCAAGCTGGGGCTCCTTTGGCTTCACATCCTGATGTAGACAAGATTTCCTTTACTGGAAGCTCTGCAACTGGAAGCAAAATTATGCAAGCTGCAGCTCAGCAAGTCAAGCCTGTTTCACTAGAGCTTGGTGGAAAAAGTCCAATTATTGTCTTCGACGATGTTGACATTGATAAGGTTGCTGAATGGACCATCCTGGGATGTTTCTTTACCAATGGTCAGATATGTAGTGCAACATCTCGGCTTCTCGTCCATGAAAACATAGCAACAAAGTTTTTGAATAGGCTTGTGGAATGGGCTAAAAACATCAAAGTTTCAGATCCCTTGGAAGATGGTTGCAAATTAGGCGCCATTGTTAGTGAAGGTCAGTATCAGAAAGTTCTGAAGTTTATTTCAACTGCTAAGAGTGAGGGTGCAACAATTTTGACCGGAGGGTCTCGCCCTGAGCATTTGAAGAAAGTTTTTGGACCTGTGCTCTGTGCCAAAACATTTAGCACTGAGGAAGAAGCTATTGAACTAGCAAATGATACCCACTATGGCTTAGGGTCAGCTGTGATGTCAAATGATCCAGAAAGATGTGAGCGTATATCAAAGGCTATTCAGGCTGGAATTGTATGGATCAATTGCTCTCAACCAACTTTCATTCAAGCCCCATGGGGAGGCATTAAACGTAGCGGGTTCGGTCGCGAATTAGGAGAATGGGGACTTGATAATTTCTTGAGTGTGAAGCAAGTTACAAAGTATATTTCTGATGAGCAGTGGGGTTGGTATAAGCGTCCTTCAAAGATGTAA 1446 0.4447 MAISIPRRELFIDGEWKAPLLNNRIPIINPSTELIIGDIPAGTKEDVEIAVEAARRALNRNKGRDWSTASGSLRATYLRAIAAKITERKDELAKLEAIDNGKPLDEAAADMDDVIASFSYYAELAEGLDAKQKASVSLPMENFKSYVIKEPIGVVALITPWNYPMLMAAWKVAAALAAGCTAVLKPSELASVTCLELADICKEVGLPAGVLNVITGLGTQAGAPLASHPDVDKISFTGSSATGSKIMQAAAQQVKPVSLELGGKSPIIVFDDVDIDKVAEWTILGCFFTNGQICSATSRLLVHENIATKFLNRLVEWAKNIKVSDPLEDGCKLGAIVSEGQYQKVLKFISTAKSEGATILTGGSRPEHLKKVFGPVLCAKTFSTEEEAIELANDTHYGLGSAVMSNDPERCERISKAIQAGIVWINCSQPTFIQAPWGGIKRSGFGRELGEWGLDNFLSVKQVTKYISDEQWGWYKRPSKM 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31328g00002 481 PANTHER ALDEHYDE DEHYDROGENASE 4 371 - -
Stsc31328g00002 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 437 461 IPR016162 GO:0016491
Stsc31328g00002 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 266 IPR016162 GO:0016491
Stsc31328g00002 481 SUPERFAMILY ALDH-like 5 469 IPR016161 GO:0016491
Stsc31328g00002 481 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Stsc31328g00002 481 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Stsc31328g00002 481 CDD ALDH_F10_BADH 27 465 - -
Stsc31328g00002 481 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Stsc31328g00002 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 371 IPR016163 GO:0016620
Stsc31328g00002 481 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 372 436 IPR016163 GO:0016620
Stsc31328g00002 481 Pfam Aldehyde dehydrogenase family 23 365 IPR015590 GO:0016491
Stsc31328g00002 481 Pfam Aldehyde dehydrogenase family 372 463 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31328g00002 Stsc-Chr31328 5881 12647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31328g00002 1 479 Aldehyde Dehydrogenase Gene Family AT1G74920 72.056 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31328g00002 K00130 - gmx:100170755 806.208